[gmx-users] g_traj + g_analyze and core dumped error

gozde ergin gozdeeergin at gmail.com
Wed Sep 16 16:40:04 CEST 2015


Dear gromacs users;

I am trying to estimate the force-force auto correlation function.
To do that first I run the command of :

 'g_traj -f tra.trr -s topol.tpr -of force.xvg'

My force.xvg file covers for all atoms in simulation box which I have 9566
atoms.
Than I run the command of :

'g_analyze -f force.xvg -ac autocorr.xvg'

however I get the error of core dumped. Here is some snapshot from screen.










*File force.xvg does not end with a newline, ignoring the last lineFile
force.xvg does not end with a newline, ignoring the last lineFile force.xvg
does not end with a newline, ignoring the last lineFile force.xvg does not
end with a newline, ignoring the last lineInvalid line in
force.xvg:....................Using zeros for the last 7819 sets.*


What could be the reason of this error?
I have enough free space and I am using gromacs 4.6.6

bests


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