[gmx-users] Solvating in a solvent other than water

[Pallavi Banerjee]

Yes, I should have put up the images.
I have uploaded two images, one of the expanded box before energy
minimization and the other after, which shows the formation of blocks. I
performed an NVT equilibration with this bad, 'block'ed box, and too many
LINCS warning show up.


1. Before minimization:
https://drive.google.com/file/d/0B0oti29Tm3S2VFhheVJ5SFBKQ1E/view?usp=sharing

2. After minimization:
https://drive.google.com/file/d/0B0oti29Tm3S2VGd5SnpZTDVhYUE/view?usp=sharing

Thanks.

-Pallavi Banerjee