[gmx-users] No domain decomposition

soumadwip ghosh soumadwipghosh at gmail.com
Thu Sep 24 12:15:35 CEST 2015

Hi all,
       I am simulating a swCNT-ssDNA hybrid ( dna encapsulated in CNT) in
the presence of some organic fillers. I made the topologies using pdb2gmx
and until the energy minimization mdrun step everything was fine. I used
the following command to for energy minimization

mdrun -deffnm em

More information about the gromacs.org_gmx-users mailing list