[gmx-users] question

[Andrew Bostick]

I obtained my lig.gro using editconf and lig.itp using antechamber.

I added lig.gro to conf.gro (for RNA).

I included  lig.itp to topolo.top file.

Double sids (704, 705) for atom 2525
Double sids (704, 705) for atom 2526
Double sids (704, 705) for atom 2527
Double sids (704, 705) for atom 2528
Double sids (704, 705) for atom 2529
Double sids (704, 705) for atom 2530
Double sids (704, 705) for atom 2531
Double sids (704, 705) for atom 2532
Double sids (704, 705) for atom 2533
Double sids (704, 705) for atom 2534
Double sids (704, 705) for atom 2535
Double sids (704, 705) for atom 2536
Double sids (704, 705) for atom 2537
Double sids (704, 705) for atom 2538
Double sids (704, 705) for atom 2539
Double sids (704, 705) for atom 2540
Double sids (704, 705) for atom 2541
Double sids (704, 705) for atom 2542
Double sids (704, 705) for atom 2543
Double sids (704, 705) for atom 2544
Double sids (704, 705) for atom 2545
Double sids (704, 705) for atom 2546
Double sids (704, 705) for atom 2547
Double sids (704, 705) for atom 2548
Double sids (704, 705) for atom 2549
Double sids (704, 705) for atom 2550

The above atom number are related to atoms in ligand.