[gmx-users] bond, angles and dihedrals in the topology file
farideh.khamseh at gmail.com
Wed Sep 30 13:21:42 CEST 2015
Could you tell me what is wrong when there are some strange bond, angles
and dihedrals in the topology file after executing pdb2gmx command?
for example atoms 1 and 27 do not have any connectivity, but pdb2gmx
generate them as [bonds]. A similar problem occurs in case of angles and
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