[gmx-users] Vizualization of the multi chain protein in MARTINI

James Starlight jmsstarlight at gmail.com
Tue Apr 12 09:45:53 CEST 2016

Dear Gromacs users!

I will be thankfull for any suggestions regarding possibilities of the
discrimination between different chains (normally defined as separate
itp files in topology.top) of the protein in case of its modeling
using MARTINI system. I have not found how to discriminate ( by
different colors of individual chains) using VMD (e.g bendix plugin)
because in CG representation there are alot of problem even with the
browsing of the sequence of the molecule.

Thanks so much for any ideas!


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