April 2016 Archives by subject

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Starting: Fri Apr 1 01:50:14 CEST 2016
Ending: Sat Apr 30 19:48:54 CEST 2016
Messages: 718

• [gmx-users] "set application clocks manually"   Irem Altan
• [gmx-users] (no subject)   ali osouli
• [gmx-users] (no subject)   Justin Lemkul
• [gmx-users] (no subject)   ali osouli
• [gmx-users] (no subject)   Mark Abraham
• [gmx-users] (no subject)   Mark Abraham
• [gmx-users] (no subject)   Mark Abraham
• [gmx-users] (no subject)   Uma Devi
• [gmx-users] (no subject)   Terry
• [gmx-users] (no subject)   Justin Lemkul
• [gmx-users] *.pdb file for the Tip4p/ice model   Elton Carvalho
• [gmx-users] *.pdb file for the Tip4p/ice model   Sheelan Sengupta
• [gmx-users] -pbc nojump failure   Erik Marklund
• [gmx-users] .mdp settings for CHARMM36   Gregory Poon
• [gmx-users] .mdp settings for CHARMM36   Justin Lemkul
• [gmx-users] 5. LINCS warning of QMMM simulation (andrian)   Groenhof, Gerrit
• [gmx-users] 5. LINCS warning of QMMM simulation (andrian)   andrian
• [gmx-users] 5. LINCS warning of QMMM simulation (andrian)   andrian
• [gmx-users] 5. LINCS warning of QMMM simulation (andrian)   andrian
• [gmx-users] 5. LINCS warning of QMMM simulation (andrian)   andrian
• [gmx-users] 5. LINCS warning of QMMM simulation (andrian)   andrian
• [gmx-users] 5. LINCS warning of QMMM simulation (andrian)   Justin Lemkul
• [gmx-users] 5. LINCS warning of QMMM simulation (andrian) (andrian)   Groenhof, Gerrit
• [gmx-users] [gmx-developers] MD Units   Erik Lindahl
• [gmx-users] [gmx-developers] MD Units   Mark Abraham
• [gmx-users] Adapting metallic ions from AMBER to GROMACS   Pedro Lacerda
• [gmx-users] Adapting metallic ions from AMBER to GROMACS   Mark Abraham
• [gmx-users] Adapting metallic ions from AMBER to GROMACS   Pedro Lacerda
• [gmx-users] Adapting metallic ions from AMBER to GROMACS   Pedro Lacerda
• [gmx-users] Adapting metallic ions from AMBER to GROMACS   Justin Lemkul
• [gmx-users] Adapting metallic ions from AMBER to GROMACS   Pedro Lacerda
• [gmx-users] Adapting metallic ions from AMBER to GROMACS   Justin Lemkul
• [gmx-users] Adapting metallic ions from AMBER to GROMACS   Pedro Lacerda
• [gmx-users] Adapting metallic ions from AMBER to GROMACS   Pedro Lacerda
• [gmx-users] Adapting metallic ions from AMBER to GROMACS   Justin Lemkul
• [gmx-users] Adapting metallic ions from AMBER to GROMACS   Pedro Lacerda
• [gmx-users] Adding Residue in .rtp file.   Md. Imrul Reza Shishir
• [gmx-users] Adding Residue in .rtp file.   Justin Lemkul
• [gmx-users] alchemical thermodynamic integration in gromacs 5.0 - bonded lambdas   Oliwia Maria Szklarczyk
• [gmx-users] Analysis of the protein-protein binding   James Starlight
• [gmx-users] Analysis of the protein-protein binding   Catarina A. Carvalheda dos Santos
• [gmx-users] Analysis of the protein-protein binding   James Starlight
• [gmx-users] Analysis of trajectory form Gromacs 5.1.2. in Gromacs 5.0.4   König, Melanie
• [gmx-users] Analysis of trajectory form Gromacs 5.1.2. in Gromacs 5.0.4   Justin Lemkul
• [gmx-users] Analysis of trajectory form Gromacs 5.1.2. in Gromacs 5.0.4   König, Melanie
• [gmx-users] angle constraint not fixing the length of bonds or angles of the residue   Javaria ashraf
• [gmx-users] Any advice on finding the binding energy from RNA Protein interaction?   Thanh Le
• [gmx-users] appropriate position restraint for stability of alpha helix   Tsjerk Wassenaar
• [gmx-users] appropriate position restraint for stability of alpha helix   Mijiddorj Batsaikhan
• [gmx-users] atomtypes   Alexander Alexander
• [gmx-users] atomtypes   Justin Lemkul
• [gmx-users] atomtypes   Alexander Alexander
• [gmx-users] atomtypes   Justin Lemkul
• [gmx-users] atomtypes   Alexander Alexander
• [gmx-users] autocorellation function   novice_md at hotmail.com
• [gmx-users] autocorellation function   Justin Lemkul
• [gmx-users] autocorellation function   sun
• [gmx-users] autocorellation function   novice_md at hotmail.com
• [gmx-users] autocorellation function   sun
• [gmx-users] Bash scripting and Gromacs   James Starlight
• [gmx-users] Bash scripting and Gromacs   Kutzner, Carsten
• [gmx-users] Bash scripting and Gromacs   James Starlight
• [gmx-users] Bash scripting and Gromacs   Kutzner, Carsten
• [gmx-users] Bash scripting and Gromacs   James Starlight
• [gmx-users] Bash scripting and Gromacs   Kutzner, Carsten
• [gmx-users] Bash scripting and Gromacs   Fabricio Cannini
• [gmx-users] Bash scripting and Gromacs   Mark Abraham
• [gmx-users] calculate change in delta G of folding due to mutation   Tushar Ranjan Moharana
• [gmx-users] Calculating change in folding free energy due to mutation   Tushar Ranjan Moharana
• [gmx-users] Catenation and Visualization   suniba
• [gmx-users] Catenation and Visualization   Tsjerk Wassenaar
• [gmx-users] Catenation and Visualization   Sun Iba
• [gmx-users] CHARMM36 ff with NBFIX in grimaces   gozde ergin
• [gmx-users] CHARMM36 ff with NBFIX in grimaces   Justin Lemkul
• [gmx-users] CHARMM36 ff with NBFIX in grimaces   gozde ergin
• [gmx-users] Choosing water molecules and box type and dimensions   zeineb SI CHAIB
• [gmx-users] Choosing water molecules and box type and dimensions   abhijit Kayal
• [gmx-users] Choosing water molecules and box type and dimensions   Justin Lemkul
• [gmx-users] Choosing water molecules and box type and dimensions   zeineb SI CHAIB
• [gmx-users] Choosing water molecules and box type and dimensions   Justin Lemkul
• [gmx-users] Choosing water molecules and box type and dimensions   abhijit Kayal
• [gmx-users] Choosing water molecules and box type and dimensions   Smith, Micholas D.
• [gmx-users] Choosing water molecules and box type and dimensions   Justin Lemkul
• [gmx-users] Choosing water molecules and box type and dimensions   Smith, Micholas D.
• [gmx-users] Compiling g_correlation   Jorge Fernández de Cossío Díaz
• [gmx-users] Compiling g_correlation   Sarath Chandra
• [gmx-users] Compiling g_correlation   Sarath Chandra
• [gmx-users] Compiling g_correlation   Jorge Fernández de Cossío Díaz
• [gmx-users] Compiling g_correlation   Justin Lemkul
• [gmx-users] Compiling g_correlation   Jorge Fernández de Cossío Díaz
• [gmx-users] Compiling g_correlation   Kutzner, Carsten
• [gmx-users] Compiling g_correlation   Jorge Fernández de Cossío Díaz
• [gmx-users] Compiling g_correlation   Jorge Fernández de Cossío Díaz
• [gmx-users] Compiling g_correlation   Jorge Fernández de Cossío Díaz
• [gmx-users] Compiling g_correlation   Mark Abraham
• [gmx-users] Compiling g_correlation   Jorge Fernández de Cossío Díaz
• [gmx-users] Compiling g_correlation   Justin Lemkul
• [gmx-users] Constant Density   Nash, Anthony
• [gmx-users] Constant Density   Smith, Micholas D.
• [gmx-users] correction to a typo in the electric conversion factor in one place in the manual   Christopher Neale
• [gmx-users] Count the number of water molecules around a macromolecule   Hassan Aaryapour
• [gmx-users] Count the number of water molecules around a macromolecule   CHEN Pan
• [gmx-users] Cyclic peptide - topology reconstruction   Ferdous, Saba
• [gmx-users] Cyclic peptide - topology reconstruction   Sarath Chandra
• [gmx-users] Defining LA atoms in .gro file   bharat gupta
• [gmx-users] Defining LA atoms in .gro file   Groenhof, Gerrit
• [gmx-users] Defining LA atoms in .gro file   bharat gupta
• [gmx-users] Density profile   Alexander Alexander
• [gmx-users] Density profile   Ashutosh Akshay Shah
• [gmx-users] Density profile   Justin Lemkul
• [gmx-users] Density profile   Alexander Alexander
• [gmx-users] Density profile   Justin Lemkul
• [gmx-users] Density profile   Alexander Alexander
• [gmx-users] Density profile   Justin Lemkul
• [gmx-users] desired usage of verlet-buffer-tolerance with charmm ff?   Mark Abraham
• [gmx-users] desired usage of verlet-buffer-tolerance with charmm ff?   Szilárd Páll
• [gmx-users] desired usage of verlet-buffer-tolerance with charmm ff?   Christopher Neale
• [gmx-users] desired usage of verlet-buffer-tolerance with charmm ff?   Christopher Neale
• [gmx-users] desired usage of verlet-buffer-tolerance with charmm ff?   Justin Lemkul
• [gmx-users] Details of 5.0 benchmark report?   Adam Huffman
• [gmx-users] Details of 5.0 benchmark report?   Szilárd Páll
• [gmx-users] Details of 5.0 benchmark report?   Adam Huffman
• [gmx-users] Details of 5.0 benchmark report?   Szilárd Páll
• [gmx-users] Dihedral convention   Parvez Mh
• [gmx-users] Dihedral convention   Justin Lemkul
• [gmx-users] Dihedral convention   Parvez Mh
• [gmx-users] Dihedral convention   Justin Lemkul
• [gmx-users] Dihedral convention   Parvez Mh
• [gmx-users] Dihedral convention   Christopher Neale
• [gmx-users] Dihedral convention   Mark Abraham
• [gmx-users] Dihedral convention   Christopher Neale
• [gmx-users] Dihedral convention   Mark Abraham
• [gmx-users] Dihedral convention   Christopher Neale
• [gmx-users] distance restraint between 2 molecules   HongTham
• [gmx-users] distance restraint between 2 molecules   Catarina A. Carvalheda dos Santos
• [gmx-users] distance restraint between 2 molecules   Erik Marklund
• [gmx-users] disulfate bond between 2 chains   Ming Tang
• [gmx-users] disulfate bond between 2 chains   Justin Lemkul
• [gmx-users] doubt about "Ignoring obsolete mdp entry"   Tushar Ranjan Moharana
• [gmx-users] doubt about "Ignoring obsolete mdp entry"   Mark Abraham
• [gmx-users] DSSP with custom residues   Stephanie Jephthah
• [gmx-users] DSSP with custom residues   Justin Lemkul
• [gmx-users] DSSP with custom residues   leila salimi
• [gmx-users] DSSP with custom residues   Justin Lemkul
• [gmx-users] DSSP with custom residues   Stephanie Jephthah
• [gmx-users] DSSP with custom residues   leila salimi
• [gmx-users] DSSP with custom residues   Justin Lemkul
• [gmx-users] dual gpu setup questions   Johannes Wagner
• [gmx-users] dual gpu setup questions   Szilárd Páll
• [gmx-users] Effect of bond constraints on equilibrium densities of equilibrated liquids   Miguel Caro
• [gmx-users] Effect of bond constraints on equilibrium densities of equilibrated liquids   Miguel Caro
• [gmx-users] EM replicates   Gregory Poon
• [gmx-users] EM replicates   Tsjerk Wassenaar
• [gmx-users] EM replicates   Gregory Poon
• [gmx-users] EM replicates   Mark Abraham
• [gmx-users] empty aminoacids.n.tdb and aminoacids.c.tdb files for Amber99*   Mark Abraham
• [gmx-users] empty aminoacids.n.tdb and aminoacids.c.tdb files for Amber99*   ABEL Stephane 175950
• [gmx-users] empty index group   David Newman
• [gmx-users] empty index group   Justin Lemkul
• [gmx-users] Error in mdrun   Roshan Shrestha
• [gmx-users] Error in mdrun   Mark Abraham
• [gmx-users] Error in mdrun   Roshan Shrestha
• [gmx-users] Error in mdrun   Justin Lemkul
• [gmx-users] error in pdb2gmx   Shahla Omidi
• [gmx-users] error in pdb2gmx   Justin Lemkul
• [gmx-users] Error: Lost Particles while sorting   Smith, Micholas D.
• [gmx-users] estimated density while using solvate   Irem Altan
• [gmx-users] estimated density while using solvate   Mark Abraham
• [gmx-users] Expanded ensemble error   Marzieh Saeedi Masineh
• [gmx-users] Expanded ensemble error   Michael Shirts
• [gmx-users] extending npt step/generating output from crashed/fatal error-based quit session.   David Newman
• [gmx-users] extending npt step/generating output from crashed/fatal error-based quit session.   Justin Lemkul
• [gmx-users] File 'urea.gro' does not exist or is not accessible.   Divya Dube
• [gmx-users] File 'urea.gro' does not exist or is not accessible.   Justin Lemkul
• [gmx-users] File 'urea.gro' does not exist or is not accessible.   Divya Dube
• [gmx-users] Flat-bottom potential SEGFAULT   Erik Marklund
• [gmx-users] Free energy including change in temperature   Andreas Mecklenfeld
• [gmx-users] Free energy including change in temperature   Justin Lemkul
• [gmx-users] further on: very strange phenomenon for my production MD by gromacs   Brett
• [gmx-users] further on: very strange phenomenon for my production MD by gromacs   Mark Abraham
• [gmx-users] further on: very strange phenomenon for my production MD by gromacs   Brett
• [gmx-users] further on: very strange phenomenon for my production MD by gromacs   Mark Abraham
• [gmx-users] Fwd: how to convert CHARMM36 system into virtual site system?   Albert
• [gmx-users] Fwd: Implementing GoIP parameters in OPLSAA   ingram
• [gmx-users] Fwd: Simulation getting slower and ultimately crashing   soumadwip ghosh
• [gmx-users] g_hbond: range checking error   Shubhangi Gupta
• [gmx-users] g_hbond: range checking error   Erik Marklund
• [gmx-users] g_hbond: range checking error   Shubhangi Gupta
• [gmx-users] g_helix   leila salimi
• [gmx-users] Generate diagram/figure with information about protein-ligand interactions   Sun Iba
• [gmx-users] Get rid of verbosity in Gromacs output   Xingcheng Lin
• [gmx-users] Get rid of verbosity in Gromacs output   Justin Lemkul
• [gmx-users] Getting Fatal Error while running simulation of Protein-Ligand complex, at the stage of generating nvt.gro   REMYA R
• [gmx-users] Getting Fatal Error while running simulation of Protein-Ligand complex, at the stage of generating nvt.gro   Justin Lemkul
• [gmx-users] Getting Fatal Error while running simulation of Protein-Ligand complex, at the stage of generating nvt.gro   REMYA R
• [gmx-users] Getting Fatal Error while running simulation of Protein-Ligand complex, at the stage of generating nvt.gro   Justin Lemkul
• [gmx-users] gmx convert-tpr, gmx check Q ?   badamkhatan togoldor
• [gmx-users] gmx convert-tpr, gmx check Q ?   Justin Lemkul
• [gmx-users] gmx convert-tpr, gmx check Q ?   badamkhatan togoldor
• [gmx-users] gmx convert-tpr, gmx check Q ?   Justin Lemkul
• [gmx-users] gmx convert-tpr, gmx check Q?   badamkhatan togoldor
• [gmx-users] gmx covar: Segmentation fault   Oliwia Maria Szklarczyk
• [gmx-users] gmx covar: Segmentation fault   Oliwia Maria Szklarczyk
• [gmx-users] gmx covar: Segmentation fault   Oliwia Maria Szklarczyk
• [gmx-users] gmx covar: Segmentation fault   Justin Lemkul
• [gmx-users] gmx densmap tool for the ensemble of the MD trajectories   James Starlight
• [gmx-users] gmx wham crashes with buffer overflow   Michail Palaiokostas Avramidis
• [gmx-users] GoIP implementation   ingram
• [gmx-users] Graphene sheet topology   soumadwip ghosh
• [gmx-users] Graphene sheet topology   soumadwip ghosh
• [gmx-users] Graphene sheet topology   Justin Lemkul
• [gmx-users] Graphene sheet topology   soumadwip ghosh
• [gmx-users] gromacs 5.1.2 and a possible bug related to energy minimization step   Brett
• [gmx-users] gromacs 5.1.2 and a possible bug related to energy minimization step   Justin Lemkul
• [gmx-users] gromacs 5.1.2 and a possible bug related to energy minimization step   Mark Abraham
• [gmx-users] Gromacs 5.1.2 installation problem   Husen R
• [gmx-users] Gromacs 5.1.2 installation problem   James Graham
• [gmx-users] Gromacs 5.1.2 installation problem   Husen R
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   treinz
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Szilárd Páll
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   treinz
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   treinz
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Szilárd Páll
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Szilárd Páll
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Téletchéa Stéphane
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   treinz
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   treinz
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Téletchéa Stéphane
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Téletchéa Stéphane
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Szilárd Páll
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Szilárd Páll
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Téletchéa Stéphane
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Szilárd Páll
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Szilárd Páll
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Szilárd Páll
• [gmx-users] gromacs 5.1.2 mdrun can't detect GPU   Stéphane Téletchéa
• [gmx-users] Gromacs Installation   ABANTIKA PAL
• [gmx-users] Gromacs Installation   Justin Lemkul
• [gmx-users] Gromacs Installation   ABANTIKA PAL
• [gmx-users] Gromacs-5.1.2 Checkpoint/restart example   Husen R
• [gmx-users] Gromacs-5.1.2 Checkpoint/restart example   Justin Lemkul
• [gmx-users] Gromacs-5.1.2 Checkpoint/restart example   Husen R
• [gmx-users] Gromacs-5.1.2 Checkpoint/restart example   Husen R
• [gmx-users] Gromacs-5.1.2 Checkpoint/restart example   Mark Abraham
• [gmx-users] Gromacs-5.1.2 Checkpoint/restart example   Husen R
• [gmx-users] Gromacs-5.1.2 Checkpoint/restart example   Mark Abraham
• [gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 119   Groenhof, Gerrit
• [gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 119   bharat gupta
• [gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 140   Roshan Shrestha
• [gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 140   Roshan Shrestha
• [gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 140   Sarath Chandra
• [gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 18   Mijiddorj Batsaikhan
• [gmx-users] H6 DPOPG problem   Marco Franzoi
• [gmx-users] Heat capacity Cv   Alexander Alexander
• [gmx-users] Higher Density than Expected   Christopher Schlicksup
• [gmx-users] Higher Density than Expected   Justin Lemkul
• [gmx-users] Higher Density than Expected   Christopher Schlicksup
• [gmx-users] Higher Density than Expected   Tsjerk Wassenaar
• [gmx-users] How to calculate the interaction energy between twomolecules   Riccardo Concu
• [gmx-users] How to calculate the interaction energy between twomolecules   Mark Abraham
• [gmx-users] How to calculate the interaction energy between two molecules   李睿
• [gmx-users] how to convert CHARMM36 system into virtual site system?   Albert
• [gmx-users] how to convert CHARMM36 system into virtual site system?   Justin Lemkul
• [gmx-users] How to initiate parallel run on GPU cluster   Venkat Reddy
• [gmx-users] How to initiate parallel run on GPU cluster   Venkat Reddy
• [gmx-users] How to initiate parallel run on GPU cluster   Mark Abraham
• [gmx-users] How to initiate parallel run on GPU cluster   Venkat Reddy
• [gmx-users] How to initiate parallel run on GPU cluster   Szilárd Páll
• [gmx-users] How to initiate parallel run on GPU cluster   Venkat Reddy
• [gmx-users] How to initiate parallel run on GPU cluster   Mark Abraham
• [gmx-users] How to initiate parallel run on GPU cluster   Venkat Reddy
• [gmx-users] hydrogen atom parameter definition for charmm 36   Nikhil Maroli
• [gmx-users] hydrogen atom parameter definition for charmm 36   Justin Lemkul
• [gmx-users] hydrogen atom parameter definition for charmm 36   Nikhil Maroli
• [gmx-users] hydrogen atom parameter definition for charmm 36   Justin Lemkul
• [gmx-users] Implementation of the v-rescale integrator   Mario Fernández Pendás
• [gmx-users] Implementing GoIP parameters in OPLSAA   ingram
• [gmx-users] Implementing GoIP parameters in OPLSAA   Justin Lemkul
• [gmx-users] inconsistent shifts while using distance restraints   Kortzak, Daniel
• [gmx-users] Installation Problem... No command 'gmx' found   Md. Imrul Reza Shishir
• [gmx-users] Installation Problem... No command 'gmx' found   terrencesun at gmail.com
• [gmx-users] Installation Problem... No command 'gmx' found   Email Gmail Pribadi
• [gmx-users] Installation Problem... No command 'gmx' found   Sotirios Dionysios I. Papadatos
• [gmx-users] Installation Problem... No command 'gmx' found   Justin Lemkul
• [gmx-users] Installation Problem... No command 'gmx' found   Md. Imrul Reza Shishir
• [gmx-users] is it necessary to mdrun posre_npt.mdp first and then posre_nvt.mdp   Tsjerk Wassenaar
• [gmx-users] Is Total Test time for regression tests relevant to real performance?   Bin Liu
• [gmx-users] Is Total Test time for regression tests relevant to real performance?   Mark Abraham
• [gmx-users] lennard jones   Alexander Alexander
• [gmx-users] lennard jones   Mark Abraham
• [gmx-users] lennard jones   Alexander Alexander
• [gmx-users] lennard jones   Justin Lemkul
• [gmx-users] LINCS error in MD simulation   f vazifeshenas
• [gmx-users] LINCS error in MD simulation   Justin Lemkul
• [gmx-users] LINCS error in MD simulation   f vazifeshenas
• [gmx-users] LINCS error in MD simulation   Sarath Chandra
• [gmx-users] LINCS error in MD simulation   Mark Abraham
• [gmx-users] LINCS warning of QMMM simulation   andrian
• [gmx-users] lipids in force field   xy21hb
• [gmx-users] lipids in force field   André Farias de Moura
• [gmx-users] LJ (6-9)   Alexander Alexander
• [gmx-users] Long distance effects of mutation and stability   Jorge Fernández de Cossío Díaz
• [gmx-users] Long distance effects of mutation and stability   Jorge Fernández de Cossío Díaz
• [gmx-users] Long distance effects of mutation and stability   Jorge Fernández de Cossío Díaz
• [gmx-users] Long distance effects of mutation and stability   Cong Fan
• [gmx-users] Long distance effects of mutation and stability   Cong Fan
• [gmx-users] Looking for the source of the H-REMD slowdown when decoupling a lot of atoms   Christopher Neale
• [gmx-users] Looking for the source of the H-REMD slowdown when decoupling a lot of atoms   Mark Abraham
• [gmx-users] Looking for the source of the H-REMD slowdown when decoupling a lot of atoms   Nicolas Cheron
• [gmx-users] Looking for the source of the H-REMD slowdown when decoupling a lot of atoms   Christopher Neale
• [gmx-users] Looking for the source of the H-REMD slowdown when decoupling a lot of atoms   Mark Abraham
• [gmx-users] MARTINI crushing   James Starlight
• [gmx-users] MARTINI crushing   Kroon, P.C.
• [gmx-users] MARTINI crushing   James Starlight
• [gmx-users] MARTINI crushing   Kroon, P.C.
• [gmx-users] MARTINI crushing   James Starlight
• [gmx-users] MARTINI crushing   Mark Abraham
• [gmx-users] MARTINI crushing   James Starlight
• [gmx-users] MARTINI crushing   Mark Abraham
• [gmx-users] MARTINI crushing   Kroon, P.C.
• [gmx-users] MARTINI crushing   James Starlight
• [gmx-users] MARTINI simulation of protein-protein recognition   James Starlight
• [gmx-users] MARTINI simulation of protein-protein recognition   Kroon, P.C.
• [gmx-users] MARTINI simulation of protein-protein recognition   James Starlight
• [gmx-users] MARTINI simulation of protein-protein recognition   Smith, Micholas D.
• [gmx-users] MARTINI simulation of protein-protein recognition   Kroon, P.C.
• [gmx-users] MARTINI simulation of protein-protein recognition   James Starlight
• [gmx-users] MARTINI simulation of protein-protein recognition   James Starlight
• [gmx-users] MARTINI simulation of protein-protein recognition   James Starlight
• [gmx-users] MARTINI simulation of protein-protein recognition   jkrieger at mrc-lmb.cam.ac.uk
• [gmx-users] MARTINI simulation of protein-protein recognition   James Starlight
• [gmx-users] MARTINI simulation of protein-protein recognition   jkrieger at mrc-lmb.cam.ac.uk
• [gmx-users] MARTINI simulation of protein-protein recognition   James Starlight
• [gmx-users] maxh mdrun option does not work with REMD simulation   Maud Jusot
• [gmx-users] maxh mdrun option does not work with REMD simulation   Mark Abraham
• [gmx-users] md example for protein complex dissociation   Brett
• [gmx-users] mdp options to generate xtc file but not trr file   Metallo Devasto
• [gmx-users] mdp options to generate xtc file but not trr file   Justin Lemkul
• [gmx-users] mdrun -rerun does not reproduce itself   Christopher Neale
• [gmx-users] mdrun -rerun does not reproduce itself   Mark Abraham
• [gmx-users] mdrun -rerun does not reproduce itself   Christopher Neale
• [gmx-users] mdrun -rerun does not reproduce itself   Szilárd Páll
• [gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups   Dai Ling (IHPC)
• [gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups   Nikhil Maroli
• [gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups   Dai Ling (IHPC)
• [gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups   Justin Lemkul
• [gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups   Dai Ling (IHPC)
• [gmx-users] mdrun on multiple nodes   Husen R
• [gmx-users] mdrun on multiple nodes   Mark Abraham
• [gmx-users] mdrun on multiple nodes   Husen R
• [gmx-users] mdrun on multiple nodes   Husen R
• [gmx-users] mdrun on multiple nodes   Husen R
• [gmx-users] mdrun on multiple nodes   Mark Abraham
• [gmx-users] mdrun on multiple nodes   Husen R
• [gmx-users] mdrun on multiple nodes   Szilárd Páll
• [gmx-users] Modified peptides   sun
• [gmx-users] Modified peptides   sun
• [gmx-users] Modified peptides   Justin Lemkul
• [gmx-users] Modified peptides   suniba
• [gmx-users] Molecule not minimized and NVT failure   suniba
• [gmx-users] Molecule not minimized and NVT failure   Justin Lemkul
• [gmx-users] Molecule not minimized and NVT failure   Mark Abraham
• [gmx-users] Molecule not minimized and NVT failure   suniba
• [gmx-users] Molecule not minimized and NVT failure   suniba
• [gmx-users] Molecule not minimized and NVT failure   suniba
• [gmx-users] Moving this mailing list to Discourse format   Mark Abraham
• [gmx-users] Moving this mailing list to Discourse format   Hannes Loeffler
• [gmx-users] Moving this mailing list to Discourse format   Mark Abraham
• [gmx-users] Moving this mailing list to Discourse format   Hannes Loeffler
• [gmx-users] NA or SOD in CHARMM36   Jason Loo Siau Ee
• [gmx-users] NA or SOD in CHARMM36   Justin Lemkul
• [gmx-users] npt equilibration nanotubes   ANAND AMITKUMAR DHARIA
• [gmx-users] Number of simulated annealing points   Tim Moore
• [gmx-users] Number of simulated annealing points   Mark Abraham
• [gmx-users] Number of simulated annealing points   Mark Abraham
• [gmx-users] Number of urea molecules for 2.1 M solution   Divya Dube
• [gmx-users] Number of urea molecules for 2.1 M solution   Justin Lemkul
• [gmx-users] on -dt of trjcat and trjconv   Brett
• [gmx-users] on -dt of trjcat and trjconv   Erik Marklund
• [gmx-users] on crashed MD   Brett
• [gmx-users] on crashed MD   Justin Lemkul
• [gmx-users] on force field for ligand   Brett
• [gmx-users] on force field for ligand   gozde ergin
• [gmx-users] on md of protein-ligand   Brett
• [gmx-users] on md of protein-ligand   suniba
• [gmx-users] on md of protein-ligand   Brett
• [gmx-users] on md of protein-ligand   Justin Lemkul
• [gmx-users] on md of protein-ligand   suniba
• [gmx-users] on md of protein-ligand   Brett
• [gmx-users] on md of protein-ligand   Mark Abraham
• [gmx-users] on md of protein-ligand   Brett
• [gmx-users] on md of protein-ligand   Justin Lemkul
• [gmx-users] on md of protein-ligand   Mark Abraham
• [gmx-users] on md of protein-ligand   Brett
• [gmx-users] on md of protein-ligand   Justin Lemkul
• [gmx-users] on md of protein-ligand complex   Brett
• [gmx-users] on md of protein-ligand complex   Nikhil Maroli
• [gmx-users] on md of protein-ligand complex   Dries Van Rompaey
• [gmx-users] on non-equilibrium MD   Brett
• [gmx-users] on non-equilibrium MD   Justin Lemkul
• [gmx-users] on non-equilibrium MD   Brett
• [gmx-users] on non-equilibrium MD   Justin Lemkul
• [gmx-users] on non-equilibrium MD   Brett
• [gmx-users] on non-equilibrium MD   Justin Lemkul
• [gmx-users] on prodrug server   Brett
• [gmx-users] on prodrug server   Justin Lemkul
• [gmx-users] Osmotic pressure   gozde ergin
• [gmx-users] Osmotic pressure   Justin Lemkul
• [gmx-users] Osmotic pressure   Mark Abraham
• [gmx-users] Osmotic pressure   gozde ergin
• [gmx-users] Osmotic pressure   gozde ergin
• [gmx-users] Osmotic pressure   gozde ergin
• [gmx-users] Osmotic pressure   Mark Abraham
• [gmx-users] Osmotic pressure   gozde ergin
• [gmx-users] Osmotic pressure   Mark Abraham
• [gmx-users] Osmotic pressure   gozde ergin
• [gmx-users] Osmotic pressure   Justin Lemkul
• [gmx-users] Osmotic pressure   gozde ergin
• [gmx-users] Parallel GPU calculation on K80   Yan Wang
• [gmx-users] Parallel GPU calculation on K80   Szilárd Páll
• [gmx-users] parameters for Glucose-6-phosphate   Francesco Carbone
• [gmx-users] parameters for Glucose-6-phosphate   Justin Lemkul
• [gmx-users] parameters for Glucose-6-phosphate   Francesco Carbone
• [gmx-users] parameters for Glucose-6-phosphate   Justin Lemkul
• [gmx-users] Partial density versus time   Faezeh Pousaneh
• [gmx-users] Partial density versus time   Tsjerk Wassenaar
• [gmx-users] Partial density versus time   Faezeh Pousaneh
• [gmx-users] Partial density versus time   Faezeh Pousaneh
• [gmx-users] Partial density versus time   Faezeh Pousaneh
• [gmx-users] Partial density versus time   Tsjerk Wassenaar
• [gmx-users] Partial density versus time   Faezeh Pousaneh
• [gmx-users] Partial density versus time   Faezeh Pousaneh
• [gmx-users] Partial density versus time   Tsjerk Wassenaar
• [gmx-users] Partial density versus time   Faezeh Pousaneh
• [gmx-users] pdb2gmx disulfide bond in dimer   s.varriale
• [gmx-users] pdb2gmx disulfide bond in dimer   Justin Lemkul
• [gmx-users] pdb2gmx disulfide bond in dimer   s.varriale
• [gmx-users] pdb2gmx disulfide bond in dimer   Justin Lemkul
• [gmx-users] pdb2gmx error   ABEL Stephane 175950
• [gmx-users] pdb2gmx error   Justin Lemkul
• [gmx-users] pdb2gmx error   ABEL Stephane 175950
• [gmx-users] pdb2gmx parametrization of proteins consisted of metallo-bindings cofactor sites   James Starlight
• [gmx-users] position restrain energy   Nikhil Maroli
• [gmx-users] position restrain energy   gozde ergin
• [gmx-users] position restrain energy   Nikhil Maroli
• [gmx-users] position restrain energy   Justin Lemkul
• [gmx-users] position restrain energy   Nikhil Maroli
• [gmx-users] position restrain energy   Justin Lemkul
• [gmx-users] position restraints   Irem Altan
• [gmx-users] position restraints   Christopher Neale
• [gmx-users] position restraints   Irem Altan
• [gmx-users] position restraints   Christopher Neale
• [gmx-users] position restraints   Irem Altan
• [gmx-users] position restraints   Christopher Neale
• [gmx-users] position restraints   Irem Altan
• [gmx-users] position restraints   Christopher Neale
• [gmx-users] position restraints   Irem Altan
• [gmx-users] Possibility to join the GROMACS team in Stockholm as a developer   Erik Lindahl
• [gmx-users] potential of mean force of pore formation in the lipid bilayer by using potential of mean constraint force (PMCF) method.   Mayank Dixit
• [gmx-users] Potential shift   Alexander Alexander
• [gmx-users] Potential shift   Mark Abraham
• [gmx-users] Preparing dual topology for free energy calculation   Tushar Ranjan Moharana
• [gmx-users] Preparing dual topology for free energy calculation   Dries Van Rompaey
• [gmx-users] Preparing dual topology for free energy calculation   Tushar Ranjan Moharana
• [gmx-users] Preparing dual topology for free energy calculation   Dries Van Rompaey
• [gmx-users] Problem in auto source   Roshan Shrestha
• [gmx-users] Problem in auto source   Irem Altan
• [gmx-users] Problem in implementing do_dssp   Rishikesh Parulekar
• [gmx-users] Problem in implementing do_dssp   Sarath Chandra
• [gmx-users] Problem in implementing do_dssp   Rishikesh Parulekar
• [gmx-users] Problem in implementing do_dssp   Sarath Chandra
• [gmx-users] Problem in implementing do_dssp   Rishikesh Parulekar
• [gmx-users] Problem in implementing do_dssp   Rishikesh Parulekar
• [gmx-users] Problem in implementing do_dssp   Rishikesh Parulekar
• [gmx-users] Problem in implementing do_dssp   Justin Lemkul
• [gmx-users] Problem in implementing do_dssp   Erik Marklund
• [gmx-users] Problem in implementing do_dssp   Rishikesh Parulekar
• [gmx-users] Problem in implementing do_dssp   Rishikesh Parulekar
• [gmx-users] Problem in implementing do_dssp   Justin Lemkul
• [gmx-users] Problem in implementing do_dssp   Rishikesh Parulekar
• [gmx-users] Problem in implementing do_dssp   Justin Lemkul
• [gmx-users] Problem in implementing do_dssp   Erik Marklund
• [gmx-users] Problem in implementing do_dssp   Rishikesh Parulekar
• [gmx-users] Problem in implementing do_dssp   Rishikesh Parulekar
• [gmx-users] Problem in implementing do_dssp   Mark Abraham
• [gmx-users] Problem in implementing do_dssp   Jianguo Li
• [gmx-users] problem regarding cut-off and the PME grid spacing   Tuhin Samanta
• [gmx-users] problem regarding cut-off and the PME grid spacing   Tuhin Samanta
• [gmx-users] problem regarding cut-off and the PME grid spacing   Mark Abraham
• [gmx-users] problem regarding cut-off and the PME grid spacing   Tuhin Samanta
• [gmx-users] problem regarding cut-off and the PME grid spacing   Mark Abraham
• [gmx-users] problem regarding cut-off and the PME grid spacing   Tuhin Samanta
• [gmx-users] problem regarding cut-off and the PME grid spacing   Justin Lemkul
• [gmx-users] problem regarding cut-off and the PME grid spacing   Mark Abraham
• [gmx-users] problem regarding cut-off and the PME grid spacing   Mark Abraham
• [gmx-users] problem regarding cut-off and the PME grid spacing   Tuhin Samanta
• [gmx-users] problem regarding cut-off and the PME grid spacing   Justin Lemkul
• [gmx-users] problem regarding cut-off and the PME grid spacing   Tuhin Samanta
• [gmx-users] problem regarding cut-off and the PME grid spacing   Justin Lemkul
• [gmx-users] Protein is Jumping from water Box   Abid Channa
• [gmx-users] Protein is Jumping from water Box   Erik Marklund
• [gmx-users] protein ligand simulation   bharat gupta
• [gmx-users] protein ligand simulation   Justin Lemkul
• [gmx-users] Protein ligand simulation   bharat gupta
• [gmx-users] protein ligand simulation   bharat gupta
• [gmx-users] protein ligand simulation   Justin Lemkul
• [gmx-users] protein ligand simulation   bharat gupta
• [gmx-users] protein ligand simulation   Justin Lemkul
• [gmx-users] protein ligand simulation   bharat gupta
• [gmx-users] protein ligand simulation   Justin Lemkul
• [gmx-users] protein ligand simulation   bharat gupta
• [gmx-users] protein ligand simulation   Justin Lemkul
• [gmx-users] Protein ligand simulation   Terry
• [gmx-users] Protein ligand simulation   bharat gupta
• [gmx-users] protein ligand simulation   bharat gupta
• [gmx-users] Protein-ligand contact maps   Patricia Jones
• [gmx-users] Protein-ligand contact maps   Justin Lemkul
• [gmx-users] pulling direction of molecule through a cyclic peptide nanotube   Alireza Mansouri
• [gmx-users] pulling direction of molecule through a cyclic peptide nanotube   Alireza Mansouri
• [gmx-users] QM calculation   mohammad r
• [gmx-users] question about preferred values in itp files   abhishek khetan
• [gmx-users] question about preferred values in itp files   Justin Lemkul
• [gmx-users] question about preferred values in itp files   Tsjerk Wassenaar
• [gmx-users] question about preferred values in itp files   abhishek khetan
• [gmx-users] question about preferred values in itp files   Justin Lemkul
• [gmx-users] Question for Gromacs Users   Brier, Troy
• [gmx-users] Question for Gromacs Users   Justin Lemkul
• [gmx-users] Question for Gromacs Users   Kroon, P.C.
• [gmx-users] questions on ligand.gro and ligand.itp preparation   Brett
• [gmx-users] questions on ligand.gro and ligand.itp preparation   Justin Lemkul
• [gmx-users] questions related to MD of protein-ligand complex   Brett
• [gmx-users] questions related to md.mdp   Brett
• [gmx-users] questions related to md.mdp   Peter Kroon
• [gmx-users] questions related to md.mdp   Nikhil Maroli
• [gmx-users] questions related to md.mdp   Mark Abraham
• [gmx-users] questions related to md.mdp   Mark Abraham
• [gmx-users] reciprocal vector of Ewald summation   Zhenyu Meng
• [gmx-users] regarding Lorentz-Berthelot mixing rules   deepak bapat
• [gmx-users] regarding Lorentz-Berthelot mixing rules   David van der Spoel
• [gmx-users] regarding Lorentz-Berthelot mixing rules   Mark Abraham
• [gmx-users] regarding Lorentz-Berthelot mixing rules   deepak bapat
• [gmx-users] Regarding Random expulsion molecular dynamics in Gromacs for ligand exit study   meenakshi
• [gmx-users] Regarding Random expulsion molecular dynamics in Gromacs for ligand exit study   Justin Lemkul
• [gmx-users] REMD of IDPs   YanhuaOuyang
• [gmx-users] REMD of IDPs   João Henriques
• [gmx-users] REMD of IDPs   Smith, Micholas D.
• [gmx-users] REMD of IDPs   João Henriques
• [gmx-users] REMD of IDPs   Smith, Micholas D.
• [gmx-users] REMD--how to determine the temperature distribution   YanhuaOuyang
• [gmx-users] REMD--how to determine the temperature distribution   Christopher Neale
• [gmx-users] REMD--how to determine the temperature distribution   YanhuaOuyang
• [gmx-users] REMD--how to determine the temperature distribution   Mark Abraham
• [gmx-users] REMD--how to determine the temperature distribution   YanhuaOuyang
• [gmx-users] Remove bad waters   Mehrnoosh Hazrati
• [gmx-users] Remove bad waters   Mark Abraham
• [gmx-users] Remove bad waters   Mehrnoosh Hazrati
• [gmx-users] Remove bad waters   Mark Abraham
• [gmx-users] Restraints Riddle/Pull Puzzle   Trayder Thomas
• [gmx-users] Restraints Riddle/Pull Puzzle   Christopher Neale
• [gmx-users] RMSD calculation of protein-ligand complex   Aswathy soman
• [gmx-users] RMSD calculation of protein-ligand complex   Pedro Lacerda
• [gmx-users] RMSD calculation of protein-ligand complex   Catarina A. Carvalheda dos Santos
• [gmx-users] RMSD calculation of protein-ligand complex   Sarath Chandra
• [gmx-users] RMSD calculation of protein-ligand complex   ashutosh srivastava
• [gmx-users] Rotation of single moleculae in vacuum   Erik Marklund
• [gmx-users] Run mdrun in parallel   Husen R
• [gmx-users] Script for measurung and exporting distances between residues in VMD or Pymol from a gromacs simulation   Faulkner, Matthew
• [gmx-users] Script for measurung and exporting distances between residues in VMD or Pymol from a gromacs simulation   Dries Van Rompaey
• [gmx-users] Script for measurung and exporting distances between residues in VMD or Pymol from a gromacs simulation   Faulkner, Matthew
• [gmx-users] select atoms of a particular zone, through trajectory   Justin Lemkul
• [gmx-users] select atoms of a particular zone, through trajectory   Mahboobe Sadr
• [gmx-users] Selection syntax in make.ndx   James Starlight
• [gmx-users] Selection syntax in make.ndx   Mark Abraham
• [gmx-users] Selection syntax in make.ndx   James Starlight
• [gmx-users] Selection syntax in make.ndx   Catarina A. Carvalheda dos Santos
• [gmx-users] Selection syntax in make.ndx   James Starlight
• [gmx-users] semi-permeable wall in gromacs   gozde ergin
• [gmx-users] semi-permeable wall in gromacs   Justin Lemkul
• [gmx-users] semi-permeable wall in gromacs   gozde ergin
• [gmx-users] semi-permeable wall in gromacs   gozde ergin
• [gmx-users] semi-permeable wall in gromacs   Justin Lemkul
• [gmx-users] semi-permeable wall in gromacs   gozde ergin
• [gmx-users] semi-permeable wall in gromacs   Justin Lemkul
• [gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures   Rakesh Sharan
• [gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures   Justin Lemkul
• [gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures   Rakesh Sharan
• [gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures   Justin Lemkul
• [gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures   Mark Abraham
• [gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures   Rakesh Sharan
• [gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures   Mark Abraham
• [gmx-users] several basic questions on GROMACS   Brett
• [gmx-users] several basic questions on GROMACS   Justin Lemkul
• [gmx-users] several basic questions on GROMACS   Brett
• [gmx-users] several basic questions on GROMACS   Justin Lemkul
• [gmx-users] simulated annealing   xy21hb
• [gmx-users] simulated annealing   xy21hb
• [gmx-users] simulated annealing   Justin Lemkul
• [gmx-users] simulation a box of water   Saeed Nasiri
• [gmx-users] simulation a box of water   Tsjerk Wassenaar
• [gmx-users] simulation a box of water   Saeed Nasiri
• [gmx-users] simulation a box of water   Tsjerk Wassenaar
• [gmx-users] simulation a box of water   Saeed Nasiri
• [gmx-users] simulation a box of water   Saeed Nasiri
• [gmx-users] simulation a box of water   Justin Lemkul
• [gmx-users] simulation a box of water   Saeed Nasiri
• [gmx-users] Simulation getting slower and ultimately crashing   soumadwip ghosh
• [gmx-users] Simulation getting slower and ultimately crashing   soumadwip ghosh
• [gmx-users] Simulation getting slower and ultimately crashing   soumadwip ghosh
• [gmx-users] simulation_uery   Ms. Nikita Bora
• [gmx-users] Simulations enclosed in sphere and arbitrary defined non standard interactions   Michał Kadlof
• [gmx-users] Simulations enclosed in sphere and arbitrary defined non standard interactions   Justin Lemkul
• [gmx-users] Some simple questions about using -rerun in mdrun for energy between two groups   Sheng Bi
• [gmx-users] Some simple questions about using -rerun in mdrun for energy between two groups   Mark Abraham
• [gmx-users] Some simple questions about using -rerun in mdrun for energy between two groups   Justin Lemkul
• [gmx-users] Some simple questions about using -rerun in mdrun for energy between two groups   Sheng Bi
• [gmx-users] Some simple questions about using -rerun in mdrun for energy between two groups   Sheng Bi
• [gmx-users] Sometimes *.tpr.gro files aren't generated   yamashita.ryoto.82s at st.kyoto-u.ac.jp
• [gmx-users] Sometimes *.tpr.gro files aren't generated   Mark Abraham
• [gmx-users] Standard volume of the simulation box   Sana Saeed
• [gmx-users] Standard volume of the simulation box   Tsjerk Wassenaar
• [gmx-users] sugar puckering   bharat gupta
• [gmx-users] sugar puckering   Téletchéa Stéphane
• [gmx-users] Syntax error   Roshan Shrestha
• [gmx-users] Syntax error   Sarath Chandra
• [gmx-users] Syntax error   Roshan Shrestha
• [gmx-users] The reproduction of Barnase-Barstar binding energy   Paris Tzou
• [gmx-users] Thermodynamic integration   Nash, Anthony
• [gmx-users] Thermodynamic integration   Hannes Loeffler
• [gmx-users] Thermodynamic integration   Nash, Anthony
• [gmx-users] Thermodynamic integration   Mark Abraham
• [gmx-users] Thermodynamic integration   Nash, Anthony
• [gmx-users] Thermodynamic integration   Hannes Loeffler
• [gmx-users] TIP5P and freeze groups   Irem Altan
• [gmx-users] Too many Lincs Warnings gromacs 5.0.5   Life Sciences Inc
• [gmx-users] Topology include file " " not found   gozde ergin
• [gmx-users] Topology include file " " not found   Justin Lemkul
• [gmx-users] Topology include file " " not found   gozde ergin
• [gmx-users] Topology include file " " not found   gozde ergin
• [gmx-users] Topology include file " " not found   Mark Abraham
• [gmx-users] Translational Pulling   Ray Chao
• [gmx-users] Translational Pulling   Justin Lemkul
• [gmx-users] Translational Pulling   Ray Chao
• [gmx-users] Translational Pulling   Ray Chao
• [gmx-users] Translational Pulling   Justin Lemkul
• [gmx-users] Translational Pulling   Ray Chao
• [gmx-users] Translational Pulling   Justin Lemkul
• [gmx-users] Translational Pulling   Ray Chao
• [gmx-users] Translational Pulling   Justin Lemkul
• [gmx-users] Translational Pulling   Ray Chao
• [gmx-users] Translational Pulling   Justin Lemkul
• [gmx-users] Translational Pulling   Ray Chao
• [gmx-users] trjconv index mismatch   Alex
• [gmx-users] trjconv index mismatch   Juan Manuel Aceves-Hernandez
• [gmx-users] trjconv index mismatch   Justin Lemkul
• [gmx-users] trjconv index mismatch   Alex
• [gmx-users] trjconv index mismatch   Justin Lemkul
• [gmx-users] trjconv index mismatch   Alex
• [gmx-users] trjconv index mismatch   Justin Lemkul
• [gmx-users] trjconv index mismatch   Alex
• [gmx-users] trjconv index mismatch   Justin Lemkul
• [gmx-users] trjconv index mismatch   Alex
• [gmx-users] trouble with ca2+ atom and SEP recognition in Gromacs 5.1.1   Jayant James
• [gmx-users] trouble with ca2+ atom and SEP recognition in Gromacs 5.1.1   Justin Lemkul
• [gmx-users] Umbrella sampling without pull   Sana Saeed
• [gmx-users] Unfolding event after restart   Daniel Luesebrink
• [gmx-users] update .hdb file   Shahla Omidi
• [gmx-users] update .hdb file   Justin Lemkul
• [gmx-users] update .hdb file   ABEL Stephane 175950
• [gmx-users] Use pdb file generated with Maestro, in Gromacs   bio hpc
• [gmx-users] Use pdb file generated with Maestro, in Gromacs   Justin Lemkul
• [gmx-users] vdwradii issue   badamkhatan togoldor
• [gmx-users] vdwradii issue   badamkhatan togoldor
• [gmx-users] vdwradii issue   badamkhatan togoldor
• [gmx-users] very strange phenomenon for my production MD by gromacs   Mark Abraham
• [gmx-users] very strange phenomenon for my production MD by gromacs   Dries Van Rompaey
• [gmx-users] very strange phenomenon for my production MD by gromacs   Tsjerk Wassenaar
• [gmx-users] very strange phenomenon for my production MD by gromacs   Mark Abraham
• [gmx-users] very strange phenomenon for my production MD by gromacs   Mark Abraham
• [gmx-users] very strange phenomenon for my production MD by gromacs   Brett
• [gmx-users] very strange phenomenon for my production MD by gromacs   Justin Lemkul
• [gmx-users] very strange phenomenon for my production MD by gromacs   Brett
• [gmx-users] very strange phenomenon for my production MD by gromacs   Brett
• [gmx-users] very strange phenomenon for my production MD by gromacs   Brett
• [gmx-users] very strange phenomenon for my production MD by gromacs   Justin Lemkul
• [gmx-users] virtual site - algorithmic reasons   Samith Rathnayake
• [gmx-users] Vizualization of the multi chain protein in MARTINI   James Starlight
• [gmx-users] Volume of system   Sana Saeed
• [gmx-users] wanted to fix cpn in lipid layer MD, -position/distance restrains   Nikhil Maroli
• [gmx-users] wanted to fix cpn in lipid layer MD, -position/distance restrains   Christopher Neale
• [gmx-users] wanted to fix cpn in lipid layer MD, -position/distance restrains   Christopher Neale
• [gmx-users] wanted to fix cpn in lipid layer MD, -position/distance restrains   Nikhil Maroli
• [gmx-users] WARNING: Incomplete frame   Brett
• [gmx-users] WARNING: Incomplete frame   Justin Lemkul
• [gmx-users] WARNING: Incomplete frame   Brett
• [gmx-users] WARNING: Incomplete frame   Justin Lemkul
• [gmx-users] Water molecule starting at atom 18511 can not be settled   Christopher Neale
• [gmx-users] Water molecule starting at atom 18511 can not be settled   Mark Abraham
• [gmx-users] Water molecule starting at atom 18511 can not be settled   Alexander Alexander
• [gmx-users] Water molecule starting at atom 18511 can not be settled   Alexander Alexander
• [gmx-users] Water molecule starting at atom 18511 can not be settled   Alexander Alexander
• [gmx-users] Water molecule starting at atom 18511 can not be settled   Alexander Alexander
• [gmx-users] Water molecule starting at atom 18511 can not be settled   Justin Lemkul
• [gmx-users] Water molecule starting at atom 18511 can not be settled   Justin Lemkul
• [gmx-users] what is the source of "CHL1" cholesterol in the gromacs charmm port?   Christopher Neale
• [gmx-users] what is the source of "CHL1" cholesterol in the gromacs charmm port?   Justin Lemkul
• [gmx-users] what is the source of "CHL1" cholesterol in the gromacs charmm port?   Christopher Neale
• [gmx-users] wierd gro file output.   abhishek khetan
• [gmx-users] wierd gro file output.   Mark Abraham
• [gmx-users] xpmtps gives empy eps file   Nikhil Maroli
• [gmx-users] xpmtps gives empy eps file   Justin Lemkul
• [gmx-users] xpmtps gives empy eps file   Nikhil Maroli
• [gmx-users] Zn moves away from protein - ligand complex   HongTham
• [gmx-users] Zn moves away from protein - ligand complex   Mark Abraham
• [gmx-users] Zn moves away from protein - ligand complex   HongTham
• [gmx-users] Zn moves away from protein - ligand complex   Mark Abraham
• [gmx-users] Zn moves away from protein - ligand complex   HongTham
• [gmx-users] Zn moves away from protein - ligand complex   Mark Abraham
• [gmx-users] Zn moves away from protein - ligand complex   HongTham

Last message date: Sat Apr 30 19:48:54 CEST 2016
Archived on: Sat Apr 30 19:48:57 CEST 2016

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