April 2016 Archives by date

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Starting: Fri Apr 1 01:50:14 CEST 2016
Ending: Sat Apr 30 19:48:54 CEST 2016
Messages: 718

[gmx-users] Number of simulated annealing points Tim Moore
[gmx-users] Number of simulated annealing points Mark Abraham
[gmx-users] Number of simulated annealing points Mark Abraham
[gmx-users] QM calculation mohammad r
[gmx-users] is it necessary to mdrun posre_npt.mdp first and then posre_nvt.mdp Tsjerk Wassenaar
[gmx-users] virtual site - algorithmic reasons Samith Rathnayake
[gmx-users] Use pdb file generated with Maestro, in Gromacs bio hpc
[gmx-users] Error: Lost Particles while sorting Smith, Micholas D.
[gmx-users] gromacs 5.1.2 and a possible bug related to energy minimization step Brett
[gmx-users] Use pdb file generated with Maestro, in Gromacs Justin Lemkul
[gmx-users] gromacs 5.1.2 and a possible bug related to energy minimization step Justin Lemkul
[gmx-users] gromacs 5.1.2 and a possible bug related to energy minimization step Mark Abraham
[gmx-users] correction to a typo in the electric conversion factor in one place in the manual Christopher Neale
[gmx-users] Looking for the source of the H-REMD slowdown when decoupling a lot of atoms Christopher Neale
[gmx-users] on non-equilibrium MD Brett
[gmx-users] on non-equilibrium MD Justin Lemkul
[gmx-users] on non-equilibrium MD Brett
[gmx-users] simulation a box of water Saeed Nasiri
[gmx-users] simulation a box of water Tsjerk Wassenaar
[gmx-users] Modified peptides sun
[gmx-users] Modified peptides sun
[gmx-users] simulation a box of water Saeed Nasiri
[gmx-users] simulation a box of water Tsjerk Wassenaar
[gmx-users] simulation a box of water Saeed Nasiri
[gmx-users] Looking for the source of the H-REMD slowdown when decoupling a lot of atoms Mark Abraham
[gmx-users] Looking for the source of the H-REMD slowdown when decoupling a lot of atoms Nicolas Cheron
[gmx-users] Rotation of single moleculae in vacuum Erik Marklund
[gmx-users] -pbc nojump failure Erik Marklund
[gmx-users] Looking for the source of the H-REMD slowdown when decoupling a lot of atoms Christopher Neale
[gmx-users] simulation a box of water Saeed Nasiri
[gmx-users] simulation a box of water Justin Lemkul
[gmx-users] Modified peptides Justin Lemkul
[gmx-users] on non-equilibrium MD Justin Lemkul
[gmx-users] simulation a box of water Saeed Nasiri
[gmx-users] Looking for the source of the H-REMD slowdown when decoupling a lot of atoms Mark Abraham
[gmx-users] on crashed MD Brett
[gmx-users] on crashed MD Justin Lemkul
[gmx-users] on non-equilibrium MD Brett
[gmx-users] Possibility to join the GROMACS team in Stockholm as a developer Erik Lindahl
[gmx-users] on non-equilibrium MD Justin Lemkul
[gmx-users] autocorellation function novice_md at hotmail.com
[gmx-users] autocorellation function Justin Lemkul
[gmx-users] on -dt of trjcat and trjconv Brett
[gmx-users] autocorellation function sun
[gmx-users] autocorellation function novice_md at hotmail.com
[gmx-users] autocorellation function sun
[gmx-users] on -dt of trjcat and trjconv Erik Marklund
[gmx-users] Restraints Riddle/Pull Puzzle Trayder Thomas
[gmx-users] position restraints Irem Altan
[gmx-users] *.pdb file for the Tip4p/ice model Elton Carvalho
[gmx-users] Restraints Riddle/Pull Puzzle Christopher Neale
[gmx-users] position restraints Christopher Neale
[gmx-users] position restraints Irem Altan
[gmx-users] position restraints Christopher Neale
[gmx-users] position restraints Irem Altan
[gmx-users] position restraints Christopher Neale
[gmx-users] position restraints Irem Altan
[gmx-users] position restraints Christopher Neale
[gmx-users] position restraints Irem Altan
[gmx-users] Umbrella sampling without pull Sana Saeed
[gmx-users] *.pdb file for the Tip4p/ice model Sheelan Sengupta
[gmx-users] Gromacs 5.1.2 installation problem Husen R
[gmx-users] Gromacs 5.1.2 installation problem James Graham
[gmx-users] pdb2gmx error ABEL Stephane 175950
[gmx-users] extending npt step/generating output from crashed/fatal error-based quit session. David Newman
[gmx-users] xpmtps gives empy eps file Nikhil Maroli
[gmx-users] Implementing GoIP parameters in OPLSAA ingram
[gmx-users] Implementing GoIP parameters in OPLSAA Justin Lemkul
[gmx-users] xpmtps gives empy eps file Justin Lemkul
[gmx-users] several basic questions on GROMACS Brett
[gmx-users] extending npt step/generating output from crashed/fatal error-based quit session. Justin Lemkul
[gmx-users] pdb2gmx error Justin Lemkul
[gmx-users] empty aminoacids.n.tdb and aminoacids.c.tdb files for Amber99* ABEL Stephane 175950
[gmx-users] several basic questions on GROMACS Justin Lemkul
[gmx-users] Simulations enclosed in sphere and arbitrary defined non standard interactions Michał Kadlof
[gmx-users] Simulations enclosed in sphere and arbitrary defined non standard interactions Justin Lemkul
[gmx-users] pdb2gmx error ABEL Stephane 175950
[gmx-users] xpmtps gives empy eps file Nikhil Maroli
[gmx-users] several basic questions on GROMACS Brett
[gmx-users] several basic questions on GROMACS Justin Lemkul
[gmx-users] WARNING: Incomplete frame Brett
[gmx-users] WARNING: Incomplete frame Justin Lemkul
[gmx-users] WARNING: Incomplete frame Brett
[gmx-users] WARNING: Incomplete frame Justin Lemkul
[gmx-users] maxh mdrun option does not work with REMD simulation Maud Jusot
[gmx-users] maxh mdrun option does not work with REMD simulation Mark Abraham
[gmx-users] empty aminoacids.n.tdb and aminoacids.c.tdb files for Amber99* Mark Abraham
[gmx-users] appropriate position restraint for stability of alpha helix Mijiddorj Batsaikhan
[gmx-users] appropriate position restraint for stability of alpha helix Tsjerk Wassenaar
[gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 18 Mijiddorj Batsaikhan
[gmx-users] npt equilibration nanotubes ANAND AMITKUMAR DHARIA
[gmx-users] Gromacs 5.1.2 installation problem Husen R
[gmx-users] "set application clocks manually" Irem Altan
[gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups Dai Ling (IHPC)
[gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups Nikhil Maroli
[gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups Dai Ling (IHPC)
[gmx-users] Problem in implementing do_dssp Rishikesh Parulekar
[gmx-users] angle constraint not fixing the length of bonds or angles of the residue Javaria ashraf
[gmx-users] questions related to md.mdp Brett
[gmx-users] Problem in implementing do_dssp Sarath Chandra
[gmx-users] questions related to md.mdp Peter Kroon
[gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups Justin Lemkul
[gmx-users] questions related to md.mdp Nikhil Maroli
[gmx-users] questions related to md.mdp Mark Abraham
[gmx-users] questions related to md.mdp Mark Abraham
[gmx-users] File 'urea.gro' does not exist or is not accessible. Divya Dube
[gmx-users] File 'urea.gro' does not exist or is not accessible. Justin Lemkul
[gmx-users] Problem in implementing do_dssp Rishikesh Parulekar
[gmx-users] Problem in implementing do_dssp Sarath Chandra
[gmx-users] Problem in implementing do_dssp Rishikesh Parulekar
[gmx-users] Problem in implementing do_dssp Rishikesh Parulekar
[gmx-users] lipids in force field xy21hb
[gmx-users] Partial density versus time Faezeh Pousaneh
[gmx-users] lipids in force field André Farias de Moura
[gmx-users] Too many Lincs Warnings gromacs 5.0.5 Life Sciences Inc
[gmx-users] questions related to MD of protein-ligand complex Brett
[gmx-users] Partial density versus time Tsjerk Wassenaar
[gmx-users] Partial density versus time Faezeh Pousaneh
[gmx-users] Partial density versus time Faezeh Pousaneh
[gmx-users] Partial density versus time Faezeh Pousaneh
[gmx-users] Problem in implementing do_dssp Rishikesh Parulekar
[gmx-users] Problem in implementing do_dssp Justin Lemkul
[gmx-users] Problem in implementing do_dssp Erik Marklund
[gmx-users] Problem in implementing do_dssp Rishikesh Parulekar
[gmx-users] Problem in implementing do_dssp Rishikesh Parulekar
[gmx-users] Problem in implementing do_dssp Justin Lemkul
[gmx-users] Problem in implementing do_dssp Rishikesh Parulekar
[gmx-users] Problem in implementing do_dssp Justin Lemkul
[gmx-users] Problem in implementing do_dssp Erik Marklund
[gmx-users] Partial density versus time Tsjerk Wassenaar
[gmx-users] Problem in implementing do_dssp Rishikesh Parulekar
[gmx-users] Any advice on finding the binding energy from RNA Protein interaction? Thanh Le
[gmx-users] Is Total Test time for regression tests relevant to real performance? Bin Liu
[gmx-users] File 'urea.gro' does not exist or is not accessible. Divya Dube
[gmx-users] Problem in implementing do_dssp Rishikesh Parulekar
[gmx-users] mdrun -rerun to obtain the non-bond interaction energy among energy groups Dai Ling (IHPC)
[gmx-users] How to initiate parallel run on GPU cluster Venkat Reddy
[gmx-users] How to initiate parallel run on GPU cluster Venkat Reddy
[gmx-users] How to initiate parallel run on GPU cluster Mark Abraham
[gmx-users] Problem in implementing do_dssp Mark Abraham
[gmx-users] Is Total Test time for regression tests relevant to real performance? Mark Abraham
[gmx-users] How to initiate parallel run on GPU cluster Venkat Reddy
[gmx-users] How to initiate parallel run on GPU cluster Szilárd Páll
[gmx-users] inconsistent shifts while using distance restraints Kortzak, Daniel
[gmx-users] How to initiate parallel run on GPU cluster Venkat Reddy
[gmx-users] How to initiate parallel run on GPU cluster Mark Abraham
[gmx-users] How to initiate parallel run on GPU cluster Venkat Reddy
[gmx-users] Problem in implementing do_dssp Jianguo Li
[gmx-users] Partial density versus time Faezeh Pousaneh
[gmx-users] Partial density versus time Faezeh Pousaneh
[gmx-users] semi-permeable wall in gromacs gozde ergin
[gmx-users] Generate diagram/figure with information about protein-ligand interactions Sun Iba
[gmx-users] TIP5P and freeze groups Irem Altan
[gmx-users] semi-permeable wall in gromacs Justin Lemkul
[gmx-users] desired usage of verlet-buffer-tolerance with charmm ff? Christopher Neale
[gmx-users] desired usage of verlet-buffer-tolerance with charmm ff? Justin Lemkul
[gmx-users] Partial density versus time Tsjerk Wassenaar
[gmx-users] desired usage of verlet-buffer-tolerance with charmm ff? Mark Abraham
[gmx-users] REMD of IDPs YanhuaOuyang
[gmx-users] REMD of IDPs João Henriques
[gmx-users] semi-permeable wall in gromacs gozde ergin
[gmx-users] Flat-bottom potential SEGFAULT Erik Marklund
[gmx-users] Partial density versus time Faezeh Pousaneh
[gmx-users] desired usage of verlet-buffer-tolerance with charmm ff? Szilárd Páll
[gmx-users] select atoms of a particular zone, through trajectory Mahboobe Sadr
[gmx-users] REMD of IDPs Smith, Micholas D.
[gmx-users] REMD of IDPs João Henriques
[gmx-users] REMD of IDPs Smith, Micholas D.
[gmx-users] Fwd: Implementing GoIP parameters in OPLSAA ingram
[gmx-users] simulated annealing xy21hb
[gmx-users] simulated annealing xy21hb
[gmx-users] desired usage of verlet-buffer-tolerance with charmm ff? Christopher Neale
[gmx-users] dual gpu setup questions Johannes Wagner
[gmx-users] EM replicates Gregory Poon
[gmx-users] EM replicates Tsjerk Wassenaar
[gmx-users] update .hdb file Shahla Omidi
[gmx-users] hydrogen atom parameter definition for charmm 36 Nikhil Maroli
[gmx-users] select atoms of a particular zone, through trajectory Justin Lemkul
[gmx-users] EM replicates Gregory Poon
[gmx-users] simulated annealing Justin Lemkul
[gmx-users] update .hdb file Justin Lemkul
[gmx-users] hydrogen atom parameter definition for charmm 36 Justin Lemkul
[gmx-users] EM replicates Mark Abraham
[gmx-users] hydrogen atom parameter definition for charmm 36 Nikhil Maroli
[gmx-users] hydrogen atom parameter definition for charmm 36 Justin Lemkul
[gmx-users] update .hdb file ABEL Stephane 175950
[gmx-users] LINCS error in MD simulation f vazifeshenas
[gmx-users] GoIP implementation ingram
[gmx-users] LINCS error in MD simulation Justin Lemkul
[gmx-users] Count the number of water molecules around a macromolecule Hassan Aaryapour
[gmx-users] Count the number of water molecules around a macromolecule CHEN Pan
[gmx-users] LINCS error in MD simulation f vazifeshenas
[gmx-users] LINCS error in MD simulation Sarath Chandra
[gmx-users] LINCS error in MD simulation Mark Abraham
[gmx-users] Regarding Random expulsion molecular dynamics in Gromacs for ligand exit study meenakshi
[gmx-users] Regarding Random expulsion molecular dynamics in Gromacs for ligand exit study Justin Lemkul
[gmx-users] Details of 5.0 benchmark report? Adam Huffman
[gmx-users] gmx convert-tpr, gmx check Q? badamkhatan togoldor
[gmx-users] Preparing dual topology for free energy calculation Tushar Ranjan Moharana
[gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures Rakesh Sharan
[gmx-users] Preparing dual topology for free energy calculation Dries Van Rompaey
[gmx-users] on md of protein-ligand complex Brett
[gmx-users] on md of protein-ligand complex Nikhil Maroli
[gmx-users] on md of protein-ligand complex Dries Van Rompaey
[gmx-users] Vizualization of the multi chain protein in MARTINI James Starlight
[gmx-users] CHARMM36 ff with NBFIX in grimaces gozde ergin
[gmx-users] Gromacs Installation ABANTIKA PAL
[gmx-users] Gromacs Installation Justin Lemkul
[gmx-users] CHARMM36 ff with NBFIX in grimaces Justin Lemkul
[gmx-users] CHARMM36 ff with NBFIX in grimaces gozde ergin
[gmx-users] Gromacs Installation ABANTIKA PAL
[gmx-users] gmx convert-tpr, gmx check Q ? badamkhatan togoldor
[gmx-users] gmx convert-tpr, gmx check Q ? Justin Lemkul
[gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures Justin Lemkul
[gmx-users] Preparing dual topology for free energy calculation Tushar Ranjan Moharana
[gmx-users] wanted to fix cpn in lipid layer MD, -position/distance restrains Nikhil Maroli
[gmx-users] gmx convert-tpr, gmx check Q ? badamkhatan togoldor
[gmx-users] Run mdrun in parallel Husen R
[gmx-users] Details of 5.0 benchmark report? Szilárd Páll
[gmx-users] wanted to fix cpn in lipid layer MD, -position/distance restrains Christopher Neale
[gmx-users] wanted to fix cpn in lipid layer MD, -position/distance restrains Christopher Neale
[gmx-users] Preparing dual topology for free energy calculation Dries Van Rompaey
[gmx-users] Question for Gromacs Users Brier, Troy
[gmx-users] Question for Gromacs Users Justin Lemkul
[gmx-users] gmx convert-tpr, gmx check Q ? Justin Lemkul
[gmx-users] wanted to fix cpn in lipid layer MD, -position/distance restrains Nikhil Maroli
[gmx-users] Question for Gromacs Users Kroon, P.C.
[gmx-users] (no subject) ali osouli
[gmx-users] (no subject) Justin Lemkul
[gmx-users] Script for measurung and exporting distances between residues in VMD or Pymol from a gromacs simulation Faulkner, Matthew
[gmx-users] Script for measurung and exporting distances between residues in VMD or Pymol from a gromacs simulation Dries Van Rompaey
[gmx-users] Script for measurung and exporting distances between residues in VMD or Pymol from a gromacs simulation Faulkner, Matthew
[gmx-users] very strange phenomenon for my production MD by gromacs Brett
[gmx-users] very strange phenomenon for my production MD by gromacs Mark Abraham
[gmx-users] very strange phenomenon for my production MD by gromacs Justin Lemkul
[gmx-users] very strange phenomenon for my production MD by gromacs Dries Van Rompaey
[gmx-users] question about preferred values in itp files abhishek khetan
[gmx-users] pulling direction of molecule through a cyclic peptide nanotube Alireza Mansouri
[gmx-users] Dihedral convention Parvez Mh
[gmx-users] pulling direction of molecule through a cyclic peptide nanotube Alireza Mansouri
[gmx-users] dual gpu setup questions Szilárd Páll
[gmx-users] question about preferred values in itp files Justin Lemkul
[gmx-users] Dihedral convention Justin Lemkul
[gmx-users] Dihedral convention Parvez Mh
[gmx-users] Dihedral convention Justin Lemkul
[gmx-users] very strange phenomenon for my production MD by gromacs Brett
[gmx-users] very strange phenomenon for my production MD by gromacs Tsjerk Wassenaar
[gmx-users] question about preferred values in itp files Tsjerk Wassenaar
[gmx-users] MARTINI crushing James Starlight
[gmx-users] MARTINI crushing Kroon, P.C.
[gmx-users] very strange phenomenon for my production MD by gromacs Brett
[gmx-users] MARTINI crushing James Starlight
[gmx-users] MARTINI crushing Kroon, P.C.
[gmx-users] very strange phenomenon for my production MD by gromacs Mark Abraham
[gmx-users] very strange phenomenon for my production MD by gromacs Brett
[gmx-users] very strange phenomenon for my production MD by gromacs Justin Lemkul
[gmx-users] pdb2gmx disulfide bond in dimer s.varriale
[gmx-users] question about preferred values in itp files abhishek khetan
[gmx-users] regarding Lorentz-Berthelot mixing rules deepak bapat
[gmx-users] regarding Lorentz-Berthelot mixing rules David van der Spoel
[gmx-users] question about preferred values in itp files Justin Lemkul
[gmx-users] pdb2gmx disulfide bond in dimer Justin Lemkul
[gmx-users] very strange phenomenon for my production MD by gromacs Mark Abraham
[gmx-users] regarding Lorentz-Berthelot mixing rules Mark Abraham
[gmx-users] MARTINI crushing James Starlight
[gmx-users] MARTINI crushing Mark Abraham
[gmx-users] MARTINI crushing James Starlight
[gmx-users] MARTINI crushing Mark Abraham
[gmx-users] pdb2gmx disulfide bond in dimer s.varriale
[gmx-users] MARTINI crushing Kroon, P.C.
[gmx-users] MARTINI crushing James Starlight
[gmx-users] Dihedral convention Parvez Mh
[gmx-users] Dihedral convention Christopher Neale
[gmx-users] Dihedral convention Mark Abraham
[gmx-users] Dihedral convention Christopher Neale
[gmx-users] regarding Lorentz-Berthelot mixing rules deepak bapat
[gmx-users] what is the source of "CHL1" cholesterol in the gromacs charmm port? Christopher Neale
[gmx-users] How to calculate the interaction energy between two molecules 李睿
[gmx-users] How to calculate the interaction energy between twomolecules Riccardo Concu
[gmx-users] Osmotic pressure gozde ergin
[gmx-users] How to calculate the interaction energy between twomolecules Mark Abraham
[gmx-users] what is the source of "CHL1" cholesterol in the gromacs charmm port? Justin Lemkul
[gmx-users] pdb2gmx disulfide bond in dimer Justin Lemkul
[gmx-users] Osmotic pressure Justin Lemkul
[gmx-users] Osmotic pressure Mark Abraham
[gmx-users] Osmotic pressure gozde ergin
[gmx-users] Osmotic pressure gozde ergin
[gmx-users] (no subject) ali osouli
[gmx-users] further on: very strange phenomenon for my production MD by gromacs Brett
[gmx-users] further on: very strange phenomenon for my production MD by gromacs Mark Abraham
[gmx-users] (no subject) Mark Abraham
[gmx-users] MARTINI simulation of protein-protein recognition James Starlight
[gmx-users] further on: very strange phenomenon for my production MD by gromacs Brett
[gmx-users] further on: very strange phenomenon for my production MD by gromacs Mark Abraham
[gmx-users] Effect of bond constraints on equilibrium densities of equilibrated liquids Miguel Caro
[gmx-users] Effect of bond constraints on equilibrium densities of equilibrated liquids Miguel Caro
[gmx-users] what is the source of "CHL1" cholesterol in the gromacs charmm port? Christopher Neale
[gmx-users] Water molecule starting at atom 18511 can not be settled Alexander Alexander
[gmx-users] Water molecule starting at atom 18511 can not be settled Mark Abraham
[gmx-users] Water molecule starting at atom 18511 can not be settled Alexander Alexander
[gmx-users] Water molecule starting at atom 18511 can not be settled Christopher Neale
[gmx-users] Water molecule starting at atom 18511 can not be settled Alexander Alexander
[gmx-users] Water molecule starting at atom 18511 can not be settled Justin Lemkul
[gmx-users] Water molecule starting at atom 18511 can not be settled Alexander Alexander
[gmx-users] Water molecule starting at atom 18511 can not be settled Justin Lemkul
[gmx-users] error in pdb2gmx Shahla Omidi
[gmx-users] Protein-ligand contact maps Patricia Jones
[gmx-users] Getting Fatal Error while running simulation of Protein-Ligand complex, at the stage of generating nvt.gro REMYA R
[gmx-users] error in pdb2gmx Justin Lemkul
[gmx-users] Protein-ligand contact maps Justin Lemkul
[gmx-users] Getting Fatal Error while running simulation of Protein-Ligand complex, at the stage of generating nvt.gro Justin Lemkul
[gmx-users] Getting Fatal Error while running simulation of Protein-Ligand complex, at the stage of generating nvt.gro REMYA R
[gmx-users] Getting Fatal Error while running simulation of Protein-Ligand complex, at the stage of generating nvt.gro Justin Lemkul
[gmx-users] Modified peptides suniba
[gmx-users] position restrain energy Nikhil Maroli
[gmx-users] on force field for ligand Brett
[gmx-users] on force field for ligand gozde ergin
[gmx-users] position restrain energy gozde ergin
[gmx-users] MARTINI simulation of protein-protein recognition Kroon, P.C.
[gmx-users] Osmotic pressure gozde ergin
[gmx-users] Osmotic pressure Mark Abraham
[gmx-users] Osmotic pressure gozde ergin
[gmx-users] Osmotic pressure Mark Abraham
[gmx-users] Osmotic pressure gozde ergin
[gmx-users] Thermodynamic integration Nash, Anthony
[gmx-users] Thermodynamic integration Hannes Loeffler
[gmx-users] Thermodynamic integration Nash, Anthony
[gmx-users] Thermodynamic integration Mark Abraham
[gmx-users] (no subject) Mark Abraham
[gmx-users] (no subject) Mark Abraham
[gmx-users] Dihedral convention Mark Abraham
[gmx-users] Thermodynamic integration Nash, Anthony
[gmx-users] Zn moves away from protein - ligand complex HongTham
[gmx-users] Thermodynamic integration Hannes Loeffler
[gmx-users] Zn moves away from protein - ligand complex Mark Abraham
[gmx-users] position restrain energy Nikhil Maroli
[gmx-users] wierd gro file output. abhishek khetan
[gmx-users] MARTINI simulation of protein-protein recognition James Starlight
[gmx-users] position restrain energy Justin Lemkul
[gmx-users] Osmotic pressure Justin Lemkul
[gmx-users] MARTINI simulation of protein-protein recognition Smith, Micholas D.
[gmx-users] MARTINI simulation of protein-protein recognition Kroon, P.C.
[gmx-users] wierd gro file output. Mark Abraham
[gmx-users] MARTINI simulation of protein-protein recognition James Starlight
[gmx-users] gmx wham crashes with buffer overflow Michail Palaiokostas Avramidis
[gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures Rakesh Sharan
[gmx-users] potential of mean force of pore formation in the lipid bilayer by using potential of mean constraint force (PMCF) method. Mayank Dixit
[gmx-users] doubt about "Ignoring obsolete mdp entry" Tushar Ranjan Moharana
[gmx-users] Molecule not minimized and NVT failure suniba
[gmx-users] doubt about "Ignoring obsolete mdp entry" Mark Abraham
[gmx-users] Molecule not minimized and NVT failure Justin Lemkul
[gmx-users] Molecule not minimized and NVT failure Mark Abraham
[gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures Justin Lemkul
[gmx-users] Molecule not minimized and NVT failure suniba
[gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures Mark Abraham
[gmx-users] Some simple questions about using -rerun in mdrun for energy between two groups Sheng Bi
[gmx-users] Molecule not minimized and NVT failure suniba
[gmx-users] Some simple questions about using -rerun in mdrun for energy between two groups Mark Abraham
[gmx-users] Some simple questions about using -rerun in mdrun for energy between two groups Justin Lemkul
[gmx-users] Get rid of verbosity in Gromacs output Xingcheng Lin
[gmx-users] Get rid of verbosity in Gromacs output Justin Lemkul
[gmx-users] Dihedral convention Christopher Neale
[gmx-users] Details of 5.0 benchmark report? Adam Huffman
[gmx-users] Details of 5.0 benchmark report? Szilárd Páll
[gmx-users] trjconv index mismatch Alex
[gmx-users] trjconv index mismatch Juan Manuel Aceves-Hernandez
[gmx-users] trjconv index mismatch Justin Lemkul
[gmx-users] trjconv index mismatch Alex
[gmx-users] trjconv index mismatch Justin Lemkul
[gmx-users] trjconv index mismatch Alex
[gmx-users] trjconv index mismatch Justin Lemkul
[gmx-users] trjconv index mismatch Alex
[gmx-users] trjconv index mismatch Justin Lemkul
[gmx-users] trjconv index mismatch Alex
[gmx-users] Zn moves away from protein - ligand complex HongTham
[gmx-users] Zn moves away from protein - ligand complex Mark Abraham
[gmx-users] Adapting metallic ions from AMBER to GROMACS Pedro Lacerda
[gmx-users] Adapting metallic ions from AMBER to GROMACS Mark Abraham
[gmx-users] Some simple questions about using -rerun in mdrun for energy between two groups Sheng Bi
[gmx-users] Some simple questions about using -rerun in mdrun for energy between two groups Sheng Bi
[gmx-users] Zn moves away from protein - ligand complex HongTham
[gmx-users] problem regarding cut-off and the PME grid spacing Tuhin Samanta
[gmx-users] Osmotic pressure gozde ergin
[gmx-users] calculate change in delta G of folding due to mutation Tushar Ranjan Moharana
[gmx-users] semi-permeable wall in gromacs gozde ergin
[gmx-users] on md of protein-ligand Brett
[gmx-users] on md of protein-ligand suniba
[gmx-users] Molecule not minimized and NVT failure suniba
[gmx-users] semi-permeable wall in gromacs Justin Lemkul
[gmx-users] on md of protein-ligand Brett
[gmx-users] on md of protein-ligand Justin Lemkul
[gmx-users] alchemical thermodynamic integration in gromacs 5.0 - bonded lambdas Oliwia Maria Szklarczyk
[gmx-users] protein ligand simulation bharat gupta
[gmx-users] semi-permeable wall in gromacs gozde ergin
[gmx-users] semi-permeable wall in gromacs Justin Lemkul
[gmx-users] protein ligand simulation Justin Lemkul
[gmx-users] MARTINI simulation of protein-protein recognition James Starlight
[gmx-users] on md of protein-ligand suniba
[gmx-users] MARTINI simulation of protein-protein recognition James Starlight
[gmx-users] MARTINI simulation of protein-protein recognition jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] position restrain energy Nikhil Maroli
[gmx-users] MARTINI simulation of protein-protein recognition James Starlight
[gmx-users] position restrain energy Justin Lemkul
[gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures Rakesh Sharan
[gmx-users] estimated density while using solvate Irem Altan
[gmx-users] MARTINI simulation of protein-protein recognition jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] SETTLE vs. LINCS -- different final energies of energy minimized structures Mark Abraham
[gmx-users] Zn moves away from protein - ligand complex Mark Abraham
[gmx-users] Adapting metallic ions from AMBER to GROMACS Pedro Lacerda
[gmx-users] estimated density while using solvate Mark Abraham
[gmx-users] Protein ligand simulation bharat gupta
[gmx-users] protein ligand simulation bharat gupta
[gmx-users] protein ligand simulation Justin Lemkul
[gmx-users] protein ligand simulation bharat gupta
[gmx-users] protein ligand simulation Justin Lemkul
[gmx-users] protein ligand simulation bharat gupta
[gmx-users] protein ligand simulation Justin Lemkul
[gmx-users] The reproduction of Barnase-Barstar binding energy Paris Tzou
[gmx-users] protein ligand simulation bharat gupta
[gmx-users] protein ligand simulation Justin Lemkul
[gmx-users] Protein ligand simulation Terry
[gmx-users] Protein ligand simulation bharat gupta
[gmx-users] (no subject) Uma Devi
[gmx-users] (no subject) Terry
[gmx-users] problem regarding cut-off and the PME grid spacing Tuhin Samanta
[gmx-users] protein ligand simulation bharat gupta
[gmx-users] on md of protein-ligand Brett
[gmx-users] mdrun on multiple nodes Husen R
[gmx-users] mdrun on multiple nodes Mark Abraham
[gmx-users] problem regarding cut-off and the PME grid spacing Mark Abraham
[gmx-users] on md of protein-ligand Mark Abraham
[gmx-users] Heat capacity Cv Alexander Alexander
[gmx-users] MARTINI simulation of protein-protein recognition James Starlight
[gmx-users] disulfate bond between 2 chains Ming Tang
[gmx-users] on md of protein-ligand Brett
[gmx-users] on md of protein-ligand Justin Lemkul
[gmx-users] disulfate bond between 2 chains Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] on md of protein-ligand Mark Abraham
[gmx-users] mdrun on multiple nodes Husen R
[gmx-users] mdrun on multiple nodes Husen R
[gmx-users] Zn moves away from protein - ligand complex HongTham
[gmx-users] Analysis of trajectory form Gromacs 5.1.2. in Gromacs 5.0.4 König, Melanie
[gmx-users] Analysis of trajectory form Gromacs 5.1.2. in Gromacs 5.0.4 Justin Lemkul
[gmx-users] mdrun on multiple nodes Husen R
[gmx-users] Remove bad waters Mehrnoosh Hazrati
[gmx-users] mdrun on multiple nodes Mark Abraham
[gmx-users] Remove bad waters Mark Abraham
[gmx-users] Remove bad waters Mehrnoosh Hazrati
[gmx-users] Remove bad waters Mark Abraham
[gmx-users] H6 DPOPG problem Marco Franzoi
[gmx-users] Analysis of trajectory form Gromacs 5.1.2. in Gromacs 5.0.4 König, Melanie
[gmx-users] on md of protein-ligand Brett
[gmx-users] on md of protein-ligand Justin Lemkul
[gmx-users] gmx covar: Segmentation fault Oliwia Maria Szklarczyk
[gmx-users] gmx covar: Segmentation fault Oliwia Maria Szklarczyk
[gmx-users] gmx covar: Segmentation fault Oliwia Maria Szklarczyk
[gmx-users] gmx covar: Segmentation fault Justin Lemkul
[gmx-users] problem regarding cut-off and the PME grid spacing Tuhin Samanta
[gmx-users] problem regarding cut-off and the PME grid spacing Mark Abraham
[gmx-users] problem regarding cut-off and the PME grid spacing Tuhin Samanta
[gmx-users] problem regarding cut-off and the PME grid spacing Justin Lemkul
[gmx-users] problem regarding cut-off and the PME grid spacing Mark Abraham
[gmx-users] problem regarding cut-off and the PME grid spacing Mark Abraham
[gmx-users] atomtypes Alexander Alexander
[gmx-users] atomtypes Justin Lemkul
[gmx-users] vdwradii issue badamkhatan togoldor
[gmx-users] atomtypes Alexander Alexander
[gmx-users] atomtypes Justin Lemkul
[gmx-users] atomtypes Alexander Alexander
[gmx-users] Long distance effects of mutation and stability Jorge Fernández de Cossío Díaz
[gmx-users] trouble with ca2+ atom and SEP recognition in Gromacs 5.1.1 Jayant James
[gmx-users] Long distance effects of mutation and stability Jorge Fernández de Cossío Díaz
[gmx-users] Long distance effects of mutation and stability Jorge Fernández de Cossío Díaz
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU treinz
[gmx-users] mdrun on multiple nodes Husen R
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Szilárd Páll
[gmx-users] mdrun on multiple nodes Szilárd Páll
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU treinz
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU treinz
[gmx-users] sugar puckering bharat gupta
[gmx-users] Installation Problem... No command 'gmx' found Md. Imrul Reza Shishir
[gmx-users] Installation Problem... No command 'gmx' found terrencesun at gmail.com
[gmx-users] Installation Problem... No command 'gmx' found Email Gmail Pribadi
[gmx-users] Number of urea molecules for 2.1 M solution Divya Dube
[gmx-users] Moving this mailing list to Discourse format Mark Abraham
[gmx-users] problem regarding cut-off and the PME grid spacing Tuhin Samanta
[gmx-users] Moving this mailing list to Discourse format Hannes Loeffler
[gmx-users] Defining LA atoms in .gro file bharat gupta
[gmx-users] Moving this mailing list to Discourse format Mark Abraham
[gmx-users] NA or SOD in CHARMM36 Jason Loo Siau Ee
[gmx-users] NA or SOD in CHARMM36 Justin Lemkul
[gmx-users] problem regarding cut-off and the PME grid spacing Justin Lemkul
[gmx-users] Number of urea molecules for 2.1 M solution Justin Lemkul
[gmx-users] trouble with ca2+ atom and SEP recognition in Gromacs 5.1.1 Justin Lemkul
[gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 119 Groenhof, Gerrit
[gmx-users] problem regarding cut-off and the PME grid spacing Tuhin Samanta
[gmx-users] problem regarding cut-off and the PME grid spacing Justin Lemkul
[gmx-users] empty index group David Newman
[gmx-users] empty index group Justin Lemkul
[gmx-users] sugar puckering Téletchéa Stéphane
[gmx-users] Installation Problem... No command 'gmx' found Sotirios Dionysios I. Papadatos
[gmx-users] Installation Problem... No command 'gmx' found Justin Lemkul
[gmx-users] Moving this mailing list to Discourse format Hannes Loeffler
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Szilárd Páll
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Szilárd Páll
[gmx-users] vdwradii issue badamkhatan togoldor
[gmx-users] vdwradii issue badamkhatan togoldor
[gmx-users] Adapting metallic ions from AMBER to GROMACS Pedro Lacerda
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Téletchéa Stéphane
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU treinz
[gmx-users] Volume of system Sana Saeed
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU treinz
[gmx-users] Installation Problem... No command 'gmx' found Md. Imrul Reza Shishir
[gmx-users] Adapting metallic ions from AMBER to GROMACS Justin Lemkul
[gmx-users] Catenation and Visualization suniba
[gmx-users] Catenation and Visualization Tsjerk Wassenaar
[gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 119 bharat gupta
[gmx-users] Parallel GPU calculation on K80 Yan Wang
[gmx-users] Catenation and Visualization Sun Iba
[gmx-users] Sometimes *.tpr.gro files aren't generated yamashita.ryoto.82s at st.kyoto-u.ac.jp
[gmx-users] RMSD calculation of protein-ligand complex Aswathy soman
[gmx-users] RMSD calculation of protein-ligand complex Pedro Lacerda
[gmx-users] RMSD calculation of protein-ligand complex Catarina A. Carvalheda dos Santos
[gmx-users] RMSD calculation of protein-ligand complex Sarath Chandra
[gmx-users] RMSD calculation of protein-ligand complex ashutosh srivastava
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Téletchéa Stéphane
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Téletchéa Stéphane
[gmx-users] Sometimes *.tpr.gro files aren't generated Mark Abraham
[gmx-users] Calculating change in folding free energy due to mutation Tushar Ranjan Moharana
[gmx-users] Defining LA atoms in .gro file Groenhof, Gerrit
[gmx-users] Defining LA atoms in .gro file bharat gupta
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Szilárd Páll
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Szilárd Páll
[gmx-users] Parallel GPU calculation on K80 Szilárd Páll
[gmx-users] Long distance effects of mutation and stability Cong Fan
[gmx-users] Long distance effects of mutation and stability Cong Fan
[gmx-users] LJ (6-9) Alexander Alexander
[gmx-users] pdb2gmx parametrization of proteins consisted of metallo-bindings cofactor sites James Starlight
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Téletchéa Stéphane
[gmx-users] Translational Pulling Ray Chao
[gmx-users] lennard jones Alexander Alexander
[gmx-users] lennard jones Mark Abraham
[gmx-users] lennard jones Alexander Alexander
[gmx-users] lennard jones Justin Lemkul
[gmx-users] Translational Pulling Justin Lemkul
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Szilárd Páll
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Szilárd Páll
[gmx-users] Translational Pulling Ray Chao
[gmx-users] Translational Pulling Ray Chao
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Szilárd Páll
[gmx-users] Translational Pulling Justin Lemkul
[gmx-users] gromacs 5.1.2 mdrun can't detect GPU Stéphane Téletchéa
[gmx-users] Translational Pulling Ray Chao
[gmx-users] Translational Pulling Justin Lemkul
[gmx-users] Translational Pulling Ray Chao
[gmx-users] Translational Pulling Justin Lemkul
[gmx-users] Translational Pulling Ray Chao
[gmx-users] Translational Pulling Justin Lemkul
[gmx-users] Translational Pulling Ray Chao
[gmx-users] Adapting metallic ions from AMBER to GROMACS Pedro Lacerda
[gmx-users] Adapting metallic ions from AMBER to GROMACS Justin Lemkul
[gmx-users] Adapting metallic ions from AMBER to GROMACS Pedro Lacerda
[gmx-users] Adapting metallic ions from AMBER to GROMACS Pedro Lacerda
[gmx-users] Adapting metallic ions from AMBER to GROMACS Justin Lemkul
[gmx-users] Adapting metallic ions from AMBER to GROMACS Pedro Lacerda
[gmx-users] Graphene sheet topology soumadwip ghosh
[gmx-users] Graphene sheet topology soumadwip ghosh
[gmx-users] Gromacs-5.1.2 Checkpoint/restart example Husen R
[gmx-users] Error in mdrun Roshan Shrestha
[gmx-users] Error in mdrun Mark Abraham
[gmx-users] md example for protein complex dissociation Brett
[gmx-users] Gromacs-5.1.2 Checkpoint/restart example Justin Lemkul
[gmx-users] Graphene sheet topology Justin Lemkul
[gmx-users] Error in mdrun Roshan Shrestha
[gmx-users] Error in mdrun Justin Lemkul
[gmx-users] Graphene sheet topology soumadwip ghosh
[gmx-users] Gromacs-5.1.2 Checkpoint/restart example Husen R
[gmx-users] how to convert CHARMM36 system into virtual site system? Albert
[gmx-users] g_helix leila salimi
[gmx-users] Standard volume of the simulation box Sana Saeed
[gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 140 Roshan Shrestha
[gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 140 Roshan Shrestha
[gmx-users] gromacs.org_gmx-users Digest, Vol 144, Issue 140 Sarath Chandra
[gmx-users] Fwd: how to convert CHARMM36 system into virtual site system? Albert
[gmx-users] Potential shift Alexander Alexander
[gmx-users] Potential shift Mark Abraham
[gmx-users] REMD--how to determine the temperature distribution YanhuaOuyang
[gmx-users] REMD--how to determine the temperature distribution Christopher Neale
[gmx-users] Problem in auto source Roshan Shrestha
[gmx-users] Problem in auto source Irem Altan
[gmx-users] [gmx-developers] MD Units Erik Lindahl
[gmx-users] Higher Density than Expected Christopher Schlicksup
[gmx-users] Higher Density than Expected Justin Lemkul
[gmx-users] how to convert CHARMM36 system into virtual site system? Justin Lemkul
[gmx-users] [gmx-developers] MD Units Mark Abraham
[gmx-users] Gromacs-5.1.2 Checkpoint/restart example Husen R
[gmx-users] Gromacs-5.1.2 Checkpoint/restart example Mark Abraham
[gmx-users] Gromacs-5.1.2 Checkpoint/restart example Husen R
[gmx-users] Gromacs-5.1.2 Checkpoint/restart example Mark Abraham
[gmx-users] Adding Residue in .rtp file. Md. Imrul Reza Shishir
[gmx-users] Syntax error Roshan Shrestha
[gmx-users] Syntax error Sarath Chandra
[gmx-users] Standard volume of the simulation box Tsjerk Wassenaar
[gmx-users] Bash scripting and Gromacs James Starlight
[gmx-users] Syntax error Roshan Shrestha
[gmx-users] Bash scripting and Gromacs Kutzner, Carsten
[gmx-users] Bash scripting and Gromacs James Starlight
[gmx-users] Adding Residue in .rtp file. Justin Lemkul
[gmx-users] Topology include file " " not found gozde ergin
[gmx-users] Bash scripting and Gromacs Kutzner, Carsten
[gmx-users] g_hbond: range checking error Shubhangi Gupta
[gmx-users] Topology include file " " not found Justin Lemkul
[gmx-users] Topology include file " " not found gozde ergin
[gmx-users] REMD--how to determine the temperature distribution YanhuaOuyang
[gmx-users] Free energy including change in temperature Andreas Mecklenfeld
[gmx-users] Free energy including change in temperature Justin Lemkul
[gmx-users] Topology include file " " not found gozde ergin
[gmx-users] g_hbond: range checking error Erik Marklund
[gmx-users] REMD--how to determine the temperature distribution Mark Abraham
[gmx-users] REMD--how to determine the temperature distribution YanhuaOuyang
[gmx-users] Topology include file " " not found Mark Abraham
[gmx-users] DSSP with custom residues Stephanie Jephthah
[gmx-users] DSSP with custom residues Justin Lemkul
[gmx-users] DSSP with custom residues leila salimi
[gmx-users] DSSP with custom residues Justin Lemkul
[gmx-users] Bash scripting and Gromacs James Starlight
[gmx-users] Constant Density Nash, Anthony
[gmx-users] Bash scripting and Gromacs Kutzner, Carsten
[gmx-users] Higher Density than Expected Christopher Schlicksup
[gmx-users] Higher Density than Expected Tsjerk Wassenaar
[gmx-users] LINCS warning of QMMM simulation andrian
[gmx-users] DSSP with custom residues Stephanie Jephthah
[gmx-users] Bash scripting and Gromacs Fabricio Cannini
[gmx-users] Bash scripting and Gromacs Mark Abraham
[gmx-users] Constant Density Smith, Micholas D.
[gmx-users] DSSP with custom residues leila salimi
[gmx-users] mdrun -rerun does not reproduce itself Christopher Neale
[gmx-users] 5. LINCS warning of QMMM simulation (andrian) Groenhof, Gerrit
[gmx-users] mdrun -rerun does not reproduce itself Mark Abraham
[gmx-users] mdp options to generate xtc file but not trr file Metallo Devasto
[gmx-users] mdp options to generate xtc file but not trr file Justin Lemkul
[gmx-users] DSSP with custom residues Justin Lemkul
[gmx-users] mdrun -rerun does not reproduce itself Christopher Neale
[gmx-users] 5. LINCS warning of QMMM simulation (andrian) andrian
[gmx-users] mdrun -rerun does not reproduce itself Szilárd Páll
[gmx-users] 5. LINCS warning of QMMM simulation (andrian) andrian
[gmx-users] Protein is Jumping from water Box Abid Channa
[gmx-users] distance restraint between 2 molecules HongTham
[gmx-users] distance restraint between 2 molecules Catarina A. Carvalheda dos Santos
[gmx-users] Protein is Jumping from water Box Erik Marklund
[gmx-users] distance restraint between 2 molecules Erik Marklund
[gmx-users] Simulation getting slower and ultimately crashing soumadwip ghosh
[gmx-users] Simulation getting slower and ultimately crashing soumadwip ghosh
[gmx-users] 5. LINCS warning of QMMM simulation (andrian) andrian
[gmx-users] 5. LINCS warning of QMMM simulation (andrian) andrian
[gmx-users] Analysis of the protein-protein binding James Starlight
[gmx-users] Analysis of the protein-protein binding Catarina A. Carvalheda dos Santos
[gmx-users] Analysis of the protein-protein binding James Starlight
[gmx-users] Compiling g_correlation Jorge Fernández de Cossío Díaz
[gmx-users] 5. LINCS warning of QMMM simulation (andrian) andrian
[gmx-users] Compiling g_correlation Sarath Chandra
[gmx-users] Compiling g_correlation Sarath Chandra
[gmx-users] 5. LINCS warning of QMMM simulation (andrian) Justin Lemkul
[gmx-users] Compiling g_correlation Jorge Fernández de Cossío Díaz
[gmx-users] Compiling g_correlation Justin Lemkul
[gmx-users] Compiling g_correlation Jorge Fernández de Cossío Díaz
[gmx-users] Compiling g_correlation Kutzner, Carsten
[gmx-users] Compiling g_correlation Jorge Fernández de Cossío Díaz
[gmx-users] Compiling g_correlation Jorge Fernández de Cossío Díaz
[gmx-users] Compiling g_correlation Jorge Fernández de Cossío Díaz
[gmx-users] Compiling g_correlation Mark Abraham
[gmx-users] Compiling g_correlation Jorge Fernández de Cossío Díaz
[gmx-users] Compiling g_correlation Justin Lemkul
[gmx-users] reciprocal vector of Ewald summation Zhenyu Meng
[gmx-users] 5. LINCS warning of QMMM simulation (andrian) (andrian) Groenhof, Gerrit
[gmx-users] g_hbond: range checking error Shubhangi Gupta
[gmx-users] Fwd: Simulation getting slower and ultimately crashing soumadwip ghosh
[gmx-users] gmx densmap tool for the ensemble of the MD trajectories James Starlight
[gmx-users] simulation_uery Ms. Nikita Bora
[gmx-users] .mdp settings for CHARMM36 Gregory Poon
[gmx-users] .mdp settings for CHARMM36 Justin Lemkul
[gmx-users] Unfolding event after restart Daniel Luesebrink
[gmx-users] questions on ligand.gro and ligand.itp preparation Brett
[gmx-users] Selection syntax in make.ndx James Starlight
[gmx-users] Selection syntax in make.ndx Mark Abraham
[gmx-users] Selection syntax in make.ndx James Starlight
[gmx-users] Selection syntax in make.ndx Catarina A. Carvalheda dos Santos
[gmx-users] Cyclic peptide - topology reconstruction Ferdous, Saba
[gmx-users] Cyclic peptide - topology reconstruction Sarath Chandra
[gmx-users] Choosing water molecules and box type and dimensions zeineb SI CHAIB
[gmx-users] Choosing water molecules and box type and dimensions abhijit Kayal
[gmx-users] Choosing water molecules and box type and dimensions Justin Lemkul
[gmx-users] Density profile Alexander Alexander
[gmx-users] questions on ligand.gro and ligand.itp preparation Justin Lemkul
[gmx-users] Selection syntax in make.ndx James Starlight
[gmx-users] Choosing water molecules and box type and dimensions zeineb SI CHAIB
[gmx-users] on prodrug server Brett
[gmx-users] Choosing water molecules and box type and dimensions Justin Lemkul
[gmx-users] on prodrug server Justin Lemkul
[gmx-users] Choosing water molecules and box type and dimensions abhijit Kayal
[gmx-users] Choosing water molecules and box type and dimensions Smith, Micholas D.
[gmx-users] Density profile Ashutosh Akshay Shah
[gmx-users] Simulation getting slower and ultimately crashing soumadwip ghosh
[gmx-users] Density profile Justin Lemkul
[gmx-users] Choosing water molecules and box type and dimensions Justin Lemkul
[gmx-users] Density profile Alexander Alexander
[gmx-users] Density profile Justin Lemkul
[gmx-users] Choosing water molecules and box type and dimensions Smith, Micholas D.
[gmx-users] Density profile Alexander Alexander
[gmx-users] Implementation of the v-rescale integrator Mario Fernández Pendás
[gmx-users] parameters for Glucose-6-phosphate Francesco Carbone
[gmx-users] Density profile Justin Lemkul
[gmx-users] parameters for Glucose-6-phosphate Justin Lemkul
[gmx-users] parameters for Glucose-6-phosphate Francesco Carbone
[gmx-users] parameters for Glucose-6-phosphate Justin Lemkul
[gmx-users] Expanded ensemble error Marzieh Saeedi Masineh
[gmx-users] Expanded ensemble error Michael Shirts

Last message date: Sat Apr 30 19:48:54 CEST 2016
Archived on: Sat Apr 30 19:48:57 CEST 2016

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