[gmx-users] Remove bad waters

[Mehrnoosh Hazrati]

hi all,

I'm simulating membrane, and when I check my .gro file I found 4-5 water
molecules got introduced into interstices in the membrane. I've changed
vdwradii.dat file, but still these 4-5 molecules remain!
Is there any way to delete them by VMD ?!  and if yes, how can I save the
new file as .gro format?

Thank you in advance
Mehrnoosh