[gmx-users] Topology include file " " not found
gozdeeergin at gmail.com
Tue Apr 26 11:57:13 CEST 2016
I am trying to simulate organic system.
Here is my tool.top file, and cis-pionic,its is in the same folder with the tool.top.
; Topology from .mol2 file
; The force field files to be included
; Include chain topologies
; Include water topology
; Position restraint for each water oxygen
[ position_restraints ]
; i funct fcx fcy fcz
1 1 1000 1000 1000
; Include topology for ions
[ system ]
; title from mol2 input
[ molecules ]
; molecule name nr.
When I try to minimize the system this is the error that I’m getting,
grompp -f minim.mdp -c lig.gro -p topol.top -o em.tpr
Topology include file " " not found
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
What is that mean?
I thought maybe there is an invisible line so I did also dos2unix however the error is still there.
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