[gmx-users] DSSP secondary structure

mohammad r mohammad.r0325 at yahoo.com
Mon Feb 15 07:32:25 CET 2016

I changed and reduced the ratio but the xpm file was not changed at all.

    On Sunday, February 14, 2016 5:05 PM, Justin Lemkul <jalemkul at vt.edu> wrote:


On 2/14/16 1:54 AM, mohammad r wrote:
> Thank you Justin,
> I used xpm2ps command with below m2p file but the resolution was not changed.
> I've attached the xpm file, even the legend can't be seen.
> is there anyway to get the result file in pdf format?
> m2p file (I found it in the gromacs website):

> xbox = 2.0 ; x‐size of a matrix element
> ybox = 2.0 ; y‐size of a matrix element

You have a rectangular matrix, with the x-dimension being much longer than the 
y-dimension.  If you set these two values to be the same, what happens to the 
size of the rectangle?  It gets uniformly scaled.  So naturally that 
accomplishes nothing.  What you need to do is reduce the ratio of xbox/ybox.



Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441

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