[gmx-users] converted topology from amber to gromacs

mohammad r mohammad.r0325 at yahoo.com
Fri Feb 19 06:57:02 CET 2016

Hi gromacs users,
I've generatedinitial structure of my system by using ambertools (topology andcoordinate files) and converted it to gromacs format (.gro and .top)by parmed, but in topology file it doesn't refer to any forcefield.Does it make any problem in the results or it is ok? Because when Icompare the simulation result with experiment it is incorrect.
Thank you, Mohammad.

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