[gmx-users] converted topology from amber to gromacs

Hai Nguyen nhai.qn at gmail.com
Fri Feb 19 08:10:02 CET 2016


You should know which AMBER force field when you made the topology file.
(How did you make it?)


On Fri, Feb 19, 2016 at 12:56 AM, mohammad r <mohammad.r0325 at yahoo.com>

> Hi gromacs users,
> I've generatedinitial structure of my system by using ambertools (topology
> andcoordinate files) and converted it to gromacs format (.gro and .top)by
> parmed, but in topology file it doesn't refer to any forcefield.Does it
> make any problem in the results or it is ok? Because when Icompare the
> simulation result with experiment it is incorrect.
> Thank you, Mohammad.
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