[gmx-users] Segmentation Fault (core dumped) in g_mmpbsa polar energy calculation

Pavithra meetpavithramsc at gmail.com
Thu Jun 2 05:51:41 CEST 2016


Sorry. My reply got posted into a new thread.

Thanks Mark and Nikhil.

@Mark
reducing the no. of frame doesn't affect the results?

@Nikhil

I don't think it's APBS compatibility problem.

I have installed Apbs 1.3 for my gromacs 4.5.7 as mentioned in the below
tutorial.

http://rashmikumari.github.io/g_mmpbsa/Download-and-Installation.html#source

can someone please help me to solve this problem? Justin sir?

regards,
Pavithra.

On Wed, Jun 1, 2016 at 6:18 PM, <
gromacs.org_gmx-users-request at maillist.sys.kth.se> wrote:

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> Today's Topics:
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>    1. Re: Segmentation Fault (core dumped) in g_mmpbsapolar     energy
>       calculation (Nikhil Maroli)
>    2. Re: Clarity on TI free energy terms (Hannes Loeffler)
>    3. Re: Clarity on TI free energy terms (Hannes Loeffler)
>    4. Error while generating ions.tpr file (kamakshi sikka)
>    5. Re: Distance restraint and pull code (HongTham)
>    6. Re: [gmx-developers] GTX 680 non detected on OS X (Mark Abraham)
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> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 1 Jun 2016 08:49:23 +0000 (UTC)
> From: Nikhil Maroli <scinikhil at gmail.com>
> To: gromacs.org_gmx-users at maillist.sys.kth.se
> Subject: Re: [gmx-users] Segmentation Fault (core dumped) in
>         g_mmpbsapolar   energy calculation
> Message-ID: <loom.20160601T104824-838 at post.gmane.org>
> Content-Type: text/plain; charset=us-ascii
>
> Please see the previous mailing list,this problem normally occurs
> incompatible APBS and g_mmpbsa check your installation carefully
>
>
>
> ------------------------------


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