June 2016 Archives by author

Messages sorted by: [ thread ] [ subject ] [ date ]
More info on this list...

Starting: Wed Jun 1 00:34:52 CEST 2016
Ending: Thu Jun 30 18:22:47 CEST 2016
Messages: 719

[gmx-users] Empty output files from gmx helix? yunshi11 .
[gmx-users] top parameters for pluronic f127 (Andrian Saputra) ABEL Stephane 175950
[gmx-users] grompp not enough parameters ABEL Stephane 175950
[gmx-users] Error while re-compiling Gromacs 5.1.2 with GPU and gcc 5.3.1 Mark Abraham
[gmx-users] Error while generating ions.tpr file Mark Abraham
[gmx-users] Error while generating ions.tpr file Mark Abraham
[gmx-users] Segmentation Fault (core dumped) in g_mmpbsa polar energy calculation Mark Abraham
[gmx-users] [gmx-developers] GTX 680 non detected on OS X Mark Abraham
[gmx-users] Segmentation Fault (core dumped) in g_mmpbsapolar energy calculation Mark Abraham
[gmx-users] Segmentation Fault (core dumped) in g_mmpbsapolar energy calculation Mark Abraham
[gmx-users] SPME energy Mark Abraham
[gmx-users] SPME energy Mark Abraham
[gmx-users] installation error gromacs-imd Mark Abraham
[gmx-users] minor edits to a .gro file Mark Abraham
[gmx-users] minor edits to a .gro file Mark Abraham
[gmx-users] using trjconv while the simulation is still running Mark Abraham
[gmx-users] how to freeze an arbitrary set of atoms Mark Abraham
[gmx-users] interfacing with Gaussian 09 Mark Abraham
[gmx-users] interfacing with Gaussian 09 Mark Abraham
[gmx-users] An extra charge Mark Abraham
[gmx-users] An extra charge Mark Abraham
[gmx-users] An extra charge Mark Abraham
[gmx-users] An extra charge Mark Abraham
[gmx-users] problem about distance restraint in REMD simulation Mark Abraham
[gmx-users] Extending the REMD Mark Abraham
[gmx-users] an error for mdrun Mark Abraham
[gmx-users] mdrun error Mark Abraham
[gmx-users] installation of gromacs as parallel in a system without access to root Mark Abraham
[gmx-users] Extending the REMD Mark Abraham
[gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 57 Mark Abraham
[gmx-users] installation of gromacs as parallel in a system without access to root Mark Abraham
[gmx-users] Something weird with shell particle dynamics Mark Abraham
[gmx-users] Something weird with shell particle dynamics Mark Abraham
[gmx-users] to neutralize the system Mark Abraham
[gmx-users] How to add solvent in a Biphasic Systems ? Mark Abraham
[gmx-users] to neutralize the system Mark Abraham
[gmx-users] net charge correction Mark Abraham
[gmx-users] Average exchange probability when extending REMD Mark Abraham
[gmx-users] Average exchange probability when extending REMD Mark Abraham
[gmx-users] Regarding installation in gpu Mark Abraham
[gmx-users] Gromacs 5.1 insert-molecules - Generating bad contacts? Mark Abraham
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Mark Abraham
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Mark Abraham
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Mark Abraham
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Mark Abraham
[gmx-users] pdb2gmx error Mark Abraham
[gmx-users] Checksum and .log error Mark Abraham
[gmx-users] Checksum and .log error Mark Abraham
[gmx-users] Dielectric Constant Mark Abraham
[gmx-users] Simple gas-phase minimization help Mark Abraham
[gmx-users] MDRUN crash Mark Abraham
[gmx-users] compile 2016-beta2 failed Mark Abraham
[gmx-users] compile 2016-beta2 failed Mark Abraham
[gmx-users] compile 2016-beta2 failed Mark Abraham
[gmx-users] compile 2016-beta2 failed Mark Abraham
[gmx-users] Gromacs 5.1 - trouble with insert-molecules Mark Abraham
[gmx-users] parallel job Mark Abraham
[gmx-users] parallel job Mark Abraham
[gmx-users] Using Glycam forcefield and amber forcefield together Mark Abraham
[gmx-users] Distance between COM of two groups Mark Abraham
[gmx-users] can we constrain a bond? Mark Abraham
[gmx-users] two protein Mark Abraham
[gmx-users] two protein Mark Abraham
[gmx-users] converting the frcmod file and off file to gromacs Mark Abraham
[gmx-users] Job Output stops being written during long simulations on HPC cluster Mark Abraham
[gmx-users] WARNING: Duplicate line found in or between hackblock and rtp entries Mark Abraham
[gmx-users] Gromacs version for polarizable model Mark Abraham
[gmx-users] Dielectric Constant Mark Abraham
[gmx-users] Using Gromacs on a cluster Mark Abraham
[gmx-users] Effect of pressure coupling time constant on equilibrium densities Mark Abraham
[gmx-users] amino acid on solid surface Mark Abraham
[gmx-users] Job Output stops being written during long simulations on HPC cluster Mark Abraham
[gmx-users] Job Output stops being written during long simulations on HPC cluster Mark Abraham
[gmx-users] Radial Distribution Function - is there symmetry? Mark Abraham
[gmx-users] How does gromacs checkpoint works Mark Abraham
[gmx-users] restart error Mark Abraham
[gmx-users] least-squares fitting the second structure on the reference structure Mark Abraham
[gmx-users] GROMOS 54a7 parameters for rare amino acids (eg. beta-alanine) Mark Abraham
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Mark Abraham
[gmx-users] How does gromacs checkpoint works Mark Abraham
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Mark Abraham
[gmx-users] Energy minimization has stopped Mark Abraham
[gmx-users] Gromacs Orca QMMM segfault Mark Abraham
[gmx-users] can we analyse Gromacs trajectory with jupyter? Mark Abraham
[gmx-users] Gromacs 5.1 build for windows 8. Cygwin compatibility with CUDA/GPU acceleration. Mark Abraham
[gmx-users] Segmentation Fault - Water on Substrate Mark Abraham
[gmx-users] pressure and density Mark Abraham
[gmx-users] Performance loss during pulling simulation Mark Abraham
[gmx-users] Extension of simulations Mark Abraham
[gmx-users] (no subject) Mark Abraham
[gmx-users] (no subject) Mark Abraham
[gmx-users] Problems when running gromacs Mark Abraham
[gmx-users] a problem for installing gromacs-5.1.2 Mark Abraham
[gmx-users] gromacs command in mpi single precision Mark Abraham
[gmx-users] (no subject) Mark Abraham
[gmx-users] How to ignore hydrogen of one part of a pdb file by pdb2gmx Mark Abraham
[gmx-users] Diffusion constant Mark Abraham
[gmx-users] Water molecule can not be settled Mark Abraham
[gmx-users] Water molecule can not be settled Mark Abraham
[gmx-users] Tesla K80 vs GeForce GTX 980-repost Mark Abraham
[gmx-users] Tesla K80 vs GeForce GTX 980-repost Mark Abraham
[gmx-users] Water molecule can not be settled Mark Abraham
[gmx-users] Treatment of HIE, HID, HIP with the Amber force field Mark Abraham
[gmx-users] Tesla K80 vs GeForce GTX 980-repost Mark Abraham
[gmx-users] Tesla K80 vs GeForce GTX 980-repost Mark Abraham
[gmx-users] REMD - replicas sampling in temperatures beyond the assigned range Mark Abraham
[gmx-users] Water molecule can not be settled Mark Abraham
[gmx-users] Water molecule can not be settled Mark Abraham
[gmx-users] md.mdp for CHARMM36 Sajad Ahrari
[gmx-users] top parameters for pluronic f127 Alan
[gmx-users] compile 2016-beta2 failed Albert
[gmx-users] compile 2016-beta2 failed Albert
[gmx-users] compile 2016-beta2 failed Albert
[gmx-users] compile 2016-beta2 failed Albert
[gmx-users] job failed. Too many CPU? Albert
[gmx-users] can we constrain a bond? Albert
[gmx-users] can we analyse Gromacs trajectory with jupyter? Albert
[gmx-users] Gromacs 5.1 build for windows 8. Cygwin compatibility with CUDA/GPU acceleration. Albert
[gmx-users] can we analyse Gromacs trajectory with jupyter? Albert
[gmx-users] wrap only in XZ? Albert
[gmx-users] wrap only in XZ? Albert
[gmx-users] gen-pairs Alexander Alexander
[gmx-users] gen-pairs Alexander Alexander
[gmx-users] gen-pairs Alexander Alexander
[gmx-users] gen-pairs Alexander Alexander
[gmx-users] An extra charge Alexander Alexander
[gmx-users] An extra charge Alexander Alexander
[gmx-users] An extra charge Alexander Alexander
[gmx-users] An extra charge Alexander Alexander
[gmx-users] frame with lowest energy Alexander Alexander
[gmx-users] water density Alexander Alexander
[gmx-users] to neutralize the system Alexander Alexander
[gmx-users] to neutralize the system Alexander Alexander
[gmx-users] to neutralize the system Alexander Alexander
[gmx-users] parallel job Alexander Alexander
[gmx-users] parallel job Alexander Alexander
[gmx-users] to neutralize the system Alexander Alexander
[gmx-users] Restart to continue a free energy calculations Alexander Alexander
[gmx-users] amino acid on solid surface Alexander Alexander
[gmx-users] selection of start or end terminus Alexander Alexander
[gmx-users] selection of start or end terminus Alexander Alexander
[gmx-users] pressure and density Alexander Alexander
[gmx-users] pressure and density Alexander Alexander
[gmx-users] pressure and density Alexander Alexander
[gmx-users] gromacs command in mpi single precision Alexander Alexander
[gmx-users] protonation of histidines Irem Altan
[gmx-users] protonation of histidines Irem Altan
[gmx-users] how to freeze an arbitrary set of atoms Irem Altan
[gmx-users] using trjconv while the simulation is still running Irem Altan
[gmx-users] automation of Free Energy calculations: webinar Rossen Apostolov
[gmx-users] Something weird with shell particle dynamics Luca Banetta
[gmx-users] Something weird with shell particle dynamics Luca Banetta
[gmx-users] MDRUN crash Luca Banetta
[gmx-users] MDRUN crash Luca Banetta
[gmx-users] MDRUN crash Luca Banetta
[gmx-users] MDRUN crash Luca Banetta
[gmx-users] MDRUN CRASH 2 Luca Banetta
[gmx-users] MDRUN CRASH 2 Luca Banetta
[gmx-users] Gromacs version for polarizable model Luca Banetta
[gmx-users] Gromacs version for polarizable model Luca Banetta
[gmx-users] SEGMENTATION FAULT (Core dumped) Luca Banetta
[gmx-users] SEGMENTATION FAULT (Core dumped) Luca Banetta
[gmx-users] SEGMENTATION FAULT (Core dumped) Luca Banetta
[gmx-users] PCA problems Antonio Baptista
[gmx-users] PCA problems Antonio Baptista
[gmx-users] GROMOS 54a7 parameters for rare amino acids (eg. beta-alanine) Antonio Baptista
[gmx-users] Number of H bonds formed between ligand and amino acid residues Subhomoi Borkotoky
[gmx-users] problem compiling template Michael Brunsteiner
[gmx-users] net charge correction Michael Brunsteiner
[gmx-users] Water molecule can not be settled zeineb SI CHAIB
[gmx-users] Water molecule can not be settled zeineb SI CHAIB
[gmx-users] Water molecule can not be settled zeineb SI CHAIB
[gmx-users] Effect of pressure coupling time constant on equilibrium densities Miguel Caro
[gmx-users] Fwd: Dodecahedron Box size and Appropriate number of SOL molecules Apramita Chand
[gmx-users] Dodecahedron Box size and Appropriate number of SOL molecules Apramita Chand
[gmx-users] (no subject) Sarath Chandra
[gmx-users] Problem in rmsf calculation Sarath Chandra
[gmx-users] MD Analysis Sarath Chandra
[gmx-users] TRR file in VMD Sarath Chandra
[gmx-users] Gromacs 5.1 benchmarks Kevin Chen
[gmx-users] Calculating avergae structure from the simulation Chandan Choudhury
[gmx-users] Job Output stops being written during long simulations on HPC cluster Benjamin Joseph Coscia
[gmx-users] Segmentation Fault - Water on Substrate Diez Fernandez, Amanda
[gmx-users] Segmentation Fault - Water on Substrate Diez Fernandez, Amanda
[gmx-users] (no subject) Mayank Dixit
[gmx-users] Total Charge on Guanine molecule by OPLS AA force field is negative Anurag Dobhal
[gmx-users] Total Charge on Guanine molecule by OPLS AA force field is negative Anurag Dobhal
[gmx-users] Total Charge on Guanine molecule by OPLS AA force field is negative Anurag Dobhal
[gmx-users] WARNING: Duplicate line found in or between hackblock and rtp entries Anurag Dobhal
[gmx-users] Energy minimization has stopped Anurag Dobhal
[gmx-users] Energy minimization has stopped Anurag Dobhal
[gmx-users] Energy minimization has stopped Anurag Dobhal
[gmx-users] Energy minimization has stopped Anurag Dobhal
[gmx-users] Parameters file for CHARMM 27 Force Field Anurag Dobhal
[gmx-users] multiple nodes, GPUs on a Cray system Jan Domanski
[gmx-users] helixorient, jacobi iteration or junk output...? Phil Dude
[gmx-users] SOLVED: Re: helixorient, jacobi iteration or junk output...? Phil Dude
[gmx-users] SOLVED: Re: helixorient, jacobi iteration or junk output...? Phil Dude
[gmx-users] Simple gas-phase minimization help Tarick E
[gmx-users] Simple gas-phase minimization help Tarick E
[gmx-users] Simple gas-phase minimization help Tarick E
[gmx-users] Simple gas-phase minimization help Tarick E
[gmx-users] PCA problems Matthias Ernst
[gmx-users] problem with intermolecular restraints Rebeca García Fandiño
[gmx-users] Gromacs in Mac OS 10.11 (el capitan) Eudes Fileti
[gmx-users] Gromacs in Mac OS 10.11 (el capitan) (Eudes Fileti) (SOLVED) Eudes Fileti
[gmx-users] gromacs.org_gmx-users Digest, Vol 145, Issue 93 Sanket Ghawali
[gmx-users] gromacs.org_gmx-users Digest, Vol 145, Issue 93 Sanket Ghawali
[gmx-users] Calculating Eccentricity Sanket Ghawali
[gmx-users] Saving trajectory with different output time steps Sanket Ghawali
[gmx-users] Binding Energy Sanket Ghawali
[gmx-users] Simulating a protein dimer Biplab Ghosh
[gmx-users] Angle restraint of a peptide Khuong Truong Gia
[gmx-users] Gromacs 5.1 insert-molecules - Generating bad contacts? Dan Gil
[gmx-users] Gromacs 5.1 - trouble with insert-molecules Dan Gil
[gmx-users] Gromacs 5.1 insert-molecules - Generating bad contacts? Dan Gil
[gmx-users] Gromacs 5.1 insert-molecules - Generating bad contacts? Dan Gil
[gmx-users] Radial Distribution Function - is there symmetry? Dan Gil
[gmx-users] Radial Distribution Function - is there symmetry? Dan Gil
[gmx-users] Problem understanding internode communication Ameya Godbole
[gmx-users] Calculating avergae structure from the simulation Agnivo Gosai
[gmx-users] How many times should I do Umbrella Sampling Agnivo Gosai
[gmx-users] interfacing with Gaussian 09 (Mark Abraham) Groenhof, Gerrit
[gmx-users] interfacing with Gaussian 09 Groenhof, Gerrit
[gmx-users] to neutralize the system Groenhof, Gerrit
[gmx-users] Gaussian/GROMACS (? ?) Groenhof, Gerrit
[gmx-users] GROMOS 54a7 parameters for rare amino acids Groenhof, Gerrit
[gmx-users] Gromacs Orca QMMM segfault Groenhof, Gerrit
[gmx-users] [gmx-developers] GTX 680 non detected on OS X Uliano Guerrini
[gmx-users] [gmx-developers] GTX 680 non detected on OS X Uliano Guerrini
[gmx-users] [gmx-developers] GTX 680 non detected on OS X Uliano Guerrini
[gmx-users] [gmx-developers] GTX 680 non detected on OS X Uliano Guerrini
[gmx-users] MD Analysis Amali Guruge
[gmx-users] Number of H bonds formed between ligand and amino acid residues Amali Guruge
[gmx-users] Number of H bonds formed between ligand and amino acid residues Amali Guruge
[gmx-users] Gromacs multisubunit defragmentation Muhammad Hagras
[gmx-users] Gromacs multisubunit defragmentation Muhammad Hagras
[gmx-users] Gromacs multisubunit defragmentation Muhammad Hagras
[gmx-users] steered md - pushing Tamas Hegedus
[gmx-users] Distance restraint and pull code HongTham
[gmx-users] Distance restraint and pull code HongTham
[gmx-users] Distance restraint and pull code HongTham
[gmx-users] Distance restraint and pull code HongTham
[gmx-users] How to add solvent in a Biphasic Systems ? Jinfeng Huang
[gmx-users] Cross correlation map of residues Florent Hédin
[gmx-users] Cross correlation map of residues Florent Hédin
[gmx-users] itp or top parameters for HEM? Florent Hédin
[gmx-users] PCA and gmx analyze Sun Iba
[gmx-users] Calculating Dielectric constant Life Sciences Inc
[gmx-users] Dielectric Constant Life Sciences Inc
[gmx-users] Dielectric Constant Life Sciences Inc
[gmx-users] simulation with new force field Chen Jingzhi
[gmx-users] 答复: simulation with new force field Chen Jingzhi
[gmx-users] Treatment of HIE, HID, HIP with the Amber force field Julian
[gmx-users] Segmentation fault after merging two equilibrated molecules! Kavyani, S.
[gmx-users] Freeze-Exclude a molecule Sajjad Kavyani
[gmx-users] Segmentation fault after merging two equilibrated molecules! Sajjad Kavyani
[gmx-users] Constant-velocity pulling Sajjad Kavyani
[gmx-users] Distance between COM of two groups Sajjad Kavyani
[gmx-users] Distance between COM of two groups Sajjad Kavyani
[gmx-users] Distance between COM of two groups Sajjad Kavyani
[gmx-users] hbond occupancy Faegheh Kazemy
[gmx-users] interfacing with Gaussian 09 Clinton King
[gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 49 Clinton King
[gmx-users] interfacing with Gaussian 09 Clinton King
[gmx-users] interfacing with Gaussian 09 (Mark Abraham) (Groenhof, Gerrit) Clinton King
[gmx-users] Basic Understanding about Gromacs C library Murilo Kramar
[gmx-users] Basic Understanding about Gromacs C library Murilo Kramar
[gmx-users] gromacs command in mpi single precision Peter Kroon
[gmx-users] Regarding Electrostatic interaction energy Sathish Kumar
[gmx-users] interpreting the output of gmx tune_pme Kutzner, Carsten
[gmx-users] installation error gromacs-imd Kutzner, Carsten
[gmx-users] installation error gromacs-imd Kutzner, Carsten
[gmx-users] installation error gromacs-imd Kutzner, Carsten
[gmx-users] electrophysiology builder Kutzner, Carsten
[gmx-users] Fwd: Re: Dimeric structure strangely separated Pedro Lacerda
[gmx-users] Fwd: Re: Dimeric structure strangely separated Pedro Lacerda
[gmx-users] Fwd: Re: Dimeric structure strangely separated Pedro Lacerda
[gmx-users] Fwd: Re: Dimeric structure strangely separated Pedro Lacerda
[gmx-users] Fwd: Re: Dimeric structure strangely separated Pedro Lacerda
[gmx-users] How to get an infinite DNA topology Justin Lemkul
[gmx-users] Distance restraint and pull code Justin Lemkul
[gmx-users] Position restrain of structure Justin Lemkul
[gmx-users] Simulating conjugated protein Justin Lemkul
[gmx-users] force filed parameters for phosphoserine with gromaces Justin Lemkul
[gmx-users] protonation of histidines Justin Lemkul
[gmx-users] force filed parameters for phosphoserine with gromaces Justin Lemkul
[gmx-users] gen-pairs Justin Lemkul
[gmx-users] gen-pairs Justin Lemkul
[gmx-users] gen-pairs Justin Lemkul
[gmx-users] gen-pairs Justin Lemkul
[gmx-users] Position restrain of of different chain in fibril structure Justin Lemkul
[gmx-users] Non-bonded energy Justin Lemkul
[gmx-users] Position restrain of of different chain in fibril structure Justin Lemkul
[gmx-users] Non-bonded energy Justin Lemkul
[gmx-users] Umbrella sampling Tutorial by Dr. Lemkul Justin Lemkul
[gmx-users] making topology file manually Justin Lemkul
[gmx-users] distance between two groups Justin Lemkul
[gmx-users] Domain Decomposition does not support simple neighbor searching. Justin Lemkul
[gmx-users] Constant-velocity pulling Justin Lemkul
[gmx-users] making topology file manually Justin Lemkul
[gmx-users] Calculating avergae structure from the simulation Justin Lemkul
[gmx-users] Paradox in .mdp parameter value between Justin's tutorial and martini's one Justin Lemkul
[gmx-users] frame with lowest energy Justin Lemkul
[gmx-users] Distance restraint and pull code Justin Lemkul
[gmx-users] minor edits to a .gro file Justin Lemkul
[gmx-users] Ring planarity Justin Lemkul
[gmx-users] Distance restraint and pull code Justin Lemkul
[gmx-users] Regarding Electrostatic interaction energy Justin Lemkul
[gmx-users] Decreased Area/Lipid for Lipid Bilayer from CHARMM-GUI Justin Lemkul
[gmx-users] Non-neutral system with iron-sulfur clusters Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] Gromacs multisubunit defragmentation Justin Lemkul
[gmx-users] Non-neutral system with iron-sulfur clusters Justin Lemkul
[gmx-users] Simple gas-phase minimization help Justin Lemkul
[gmx-users] Gromacs multisubunit defragmentation Justin Lemkul
[gmx-users] Gromacs multisubunit defragmentation Justin Lemkul
[gmx-users] Lipid parameterization Justin Lemkul
[gmx-users] Decreased Area/Lipid of Lipid Bilayer for CHARMM-GUI Justin Lemkul
[gmx-users] Lipid parameterization Justin Lemkul
[gmx-users] Regarding installation in gpu Justin Lemkul
[gmx-users] Something weird with shell particle dynamics Justin Lemkul
[gmx-users] h_bond Justin Lemkul
[gmx-users] Fwd: Re: Dimeric structure strangely separated Justin Lemkul
[gmx-users] Fwd: Re: Dimeric structure strangely separated Justin Lemkul
[gmx-users] Fwd: Re: Dimeric structure strangely separated Justin Lemkul
[gmx-users] Regarding installation in gpu Justin Lemkul
[gmx-users] grompp not enough parameters Justin Lemkul
[gmx-users] Fwd: Re: Dimeric structure strangely separated Justin Lemkul
[gmx-users] Simulation in Constant pH simulation ... Justin Lemkul
[gmx-users] Simulation in Constant pH simulation ... Justin Lemkul
[gmx-users] Lipid parameterization Justin Lemkul
[gmx-users] Simple gas-phase minimization help Justin Lemkul
[gmx-users] MDRUN crash Justin Lemkul
[gmx-users] Simple gas-phase minimization help Justin Lemkul
[gmx-users] MDRUN crash Justin Lemkul
[gmx-users] Total Charge on Guanine molecule by OPLS AA force field is negative Justin Lemkul
[gmx-users] Total Charge on Guanine molecule by OPLS AA force field is negative Justin Lemkul
[gmx-users] MDRUN crash Justin Lemkul
[gmx-users] compile 2016-beta2 failed Justin Lemkul
[gmx-users] job failed. Too many CPU? Justin Lemkul
[gmx-users] MDRUN CRASH 2 Justin Lemkul
[gmx-users] Distance between COM of two groups Justin Lemkul
[gmx-users] charmm36 ions fix Justin Lemkul
[gmx-users] Restart to continue a free energy calculations Justin Lemkul
[gmx-users] gmx rdf Justin Lemkul
[gmx-users] to neutralize the system Justin Lemkul
[gmx-users] Gromacs 5.1 insert-molecules - Generating bad contacts? Justin Lemkul
[gmx-users] charmm36 ions fix Justin Lemkul
[gmx-users] charmm36 ions fix Justin Lemkul
[gmx-users] Tutorial 2: KALP-15 in DPPC Justin Lemkul
[gmx-users] Tutorial 2: KALP-15 in DPPC Justin Lemkul
[gmx-users] Tutorial 2: KALP-15 in DPPC Justin Lemkul
[gmx-users] charmm36 ions fix Justin Lemkul
[gmx-users] gmx convert-tpr Justin Lemkul
[gmx-users] Tutorial #3 : Umbrella Sampling (By Justin Lemkul) Justin Lemkul
[gmx-users] Block averaging Justin Lemkul
[gmx-users] Gromacs version for polarizable model Justin Lemkul
[gmx-users] Gromacs tutorial similar to Justin Lemkul's Justin Lemkul
[gmx-users] selection of start or end terminus Justin Lemkul
[gmx-users] selection of start or end terminus Justin Lemkul
[gmx-users] Energy minimization has stopped Justin Lemkul
[gmx-users] Energy minimization has stopped Justin Lemkul
[gmx-users] Energy minimization has stopped Justin Lemkul
[gmx-users] Energy minimization has stopped Justin Lemkul
[gmx-users] How to manage carbohydrate connected to a protein Justin Lemkul
[gmx-users] Parameters file for CHARMM 27 Force Field Justin Lemkul
[gmx-users] Block averaging Justin Lemkul
[gmx-users] GPU acceleration Justin Lemkul
[gmx-users] Mn/Mn2+ Parameters included in Amberff Justin Lemkul
[gmx-users] GPU acceleration Justin Lemkul
[gmx-users] GPU acceleration Justin Lemkul
[gmx-users] SEGMENTATION FAULT (Core dumped) Justin Lemkul
[gmx-users] SEGMENTATION FAULT (Core dumped) Justin Lemkul
[gmx-users] hbond between backbone atoms Justin Lemkul
[gmx-users] Information about different analysis tools in Gromacs Justin Lemkul
[gmx-users] How to ignore hydrogen of one part of a pdb file by pdb2gmx Justin Lemkul
[gmx-users] charge assign acetaminophen Justin Lemkul
[gmx-users] REMD - replicas sampling in temperatures beyond the assigned range Justin Lemkul
[gmx-users] rmsdist Justin Lemkul
[gmx-users] REMD - replicas sampling in temperatures beyond the assigned range Justin Lemkul
[gmx-users] Clarity on TI free energy terms Hannes Loeffler
[gmx-users] Clarity on TI free energy terms Hannes Loeffler
[gmx-users] Clarity on TI free energy terms Hannes Loeffler
[gmx-users] Clarity on TI free energy terms Hannes Loeffler
[gmx-users] Clarity on TI free energy terms Hannes Loeffler
[gmx-users] Clarity on TI free energy terms Hannes Loeffler
[gmx-users] Software generating gaff for gromacs with am1bcc charges Hannes Loeffler
[gmx-users] top parameters for pluronic f127 SAKO MIRZAIE
[gmx-users] top parameters for pluronic f127 SAKO MIRZAIE
[gmx-users] top parameters for pluronic f127 SAKO MIRZAIE
[gmx-users] top parameters for pluronic f127 SAKO MIRZAIE
[gmx-users] Regarding installation in gpu SOUVIK MONDAL
[gmx-users] Regarding installation in gpu SOUVIK MONDAL
[gmx-users] How to manage carbohydrate connected to a protein Stella Maganhi
[gmx-users] gmx hbond - specify precise atom names involved Erik Marklund
[gmx-users] Open-closed transition in a dimeric enzyme, WTM simulations Erik Marklund
[gmx-users] Calculating Eccentricity Erik Marklund
[gmx-users] selection of start or end terminus Erik Marklund
[gmx-users] Number of H bonds formed between ligand and amino acid residues Erik Marklund
[gmx-users] charge of aminoacids in an special pH Erik Marklund
[gmx-users] Segmentation Fault (core dumped) in g_mmpbsapolar energy calculation Nikhil Maroli
[gmx-users] Segmentation Fault (core dumped) in g_mmpbsapolar energy calculation Nikhil Maroli
[gmx-users] How to fix the ends of the protein? Nikhil Maroli
[gmx-users] Umbrella Sampling (Justin Lemkul) Nikhil Maroli
[gmx-users] adding extra ions to charmm gui output Nikhil Maroli
[gmx-users] Simulation in Constant pH simulation ... Nikhil Maroli
[gmx-users] electrophysiology builder Nikhil Maroli
[gmx-users] Simulation in Constant pH simulation ... Nikhil Maroli
[gmx-users] electrophysiology builder Nikhil Maroli
[gmx-users] Simulation in Constant pH simulation ... Nikhil Maroli
[gmx-users] Tesla K80 vs 3 x GTX 980ti Nikhil Maroli
[gmx-users] Tesla K80 vs GeForce GTX 980-repost Nikhil Maroli
[gmx-users] Tesla K80 vs GeForce GTX 980-repost Nikhil Maroli
[gmx-users] Tesla K80 vs GeForce GTX 980-repost Nikhil Maroli
[gmx-users] Gromacs Orca QMMM segfault Thilo Mast
[gmx-users] Gromacs Orca QMMM segfault Thilo Mast
[gmx-users] cannot output all the structures of one cluster Zhenyu Meng
[gmx-users] Performance loss during pulling simulation Jan Meyer
[gmx-users] SPME energy Parvez Mh
[gmx-users] error installing trj_cavity with gromacs Williams Miranda
[gmx-users] error installing trj_cavity with gromacs Williams Miranda
[gmx-users] (no subject) Sepideh Momeninezhad
[gmx-users] (no subject) Sepideh Momeninezhad
[gmx-users] (no subject) Sepideh Momeninezhad
[gmx-users] (no subject) Sepideh Momeninezhad
[gmx-users] (no subject) Sepideh Momeninezhad
[gmx-users] query on performance of GTX 1080 in gromacs Jagannath Mondal
[gmx-users] problem installing gromacs in ubuntu Jagannath Mondal
[gmx-users] query on performance of GTX 1080 in gromacs Jagannath Mondal
[gmx-users] Segmentation fault after merging two equilibrated molecules! André Farias de Moura
[gmx-users] How many times should I do Umbrella Sampling André Farias de Moura
[gmx-users] gmx gangle selections help Teemu Murtola
[gmx-users] distance between two groups Teemu Murtola
[gmx-users] problem compiling template Teemu Murtola
[gmx-users] Running all the processors in HPC Santhosh Kumar Nagarajan
[gmx-users] Clarity on TI free energy terms Nash, Anthony
[gmx-users] Clarity on TI free energy terms Nash, Anthony
[gmx-users] Clarity on TI free energy terms Nash, Anthony
[gmx-users] Clarity on TI free energy terms Nash, Anthony
[gmx-users] Clarity on TI free energy terms Nash, Anthony
[gmx-users] Clarity on TI free energy terms Nash, Anthony
[gmx-users] Clarity on TI free energy terms Nash, Anthony
[gmx-users] minor edits to a .gro file Nash, Anthony
[gmx-users] minor edits to a .gro file Nash, Anthony
[gmx-users] minor edits to a .gro file Nash, Anthony
[gmx-users] Missing oxyz in vmx distance output Nash, Anthony
[gmx-users] minor edits to a .gro file Nash, Anthony
[gmx-users] h_bond Shahid Nayeem
[gmx-users] problem about distance restraint in REMD simulation Christopher Neale
[gmx-users] Decreased Area Per Lipid for Lipid Bilayer obtained from CHARMM-GUI Christopher Neale
[gmx-users] water density Christopher Neale
[gmx-users] Decreased Area Per Lipid for Lipid Bilayer obtained from CHARMM-GUI Christopher Neale
[gmx-users] Decreased Area/Lipid of Lipid Bilayer from CHARMM-GUI Christopher Neale
[gmx-users] Lipid parameterization Christopher Neale
[gmx-users] Lipid parameterization Christopher Neale
[gmx-users] PMF steadily increasing Christopher Neale
[gmx-users] Basic Understanding about Gromacs C library Christopher Neale
[gmx-users] compile 2016-beta2 failed Christopher Neale
[gmx-users] PMF steadily increasing Christopher Neale
[gmx-users] can we analyse Gromacs trajectory with jupyter? Hai Nguyen
[gmx-users] can we analyse Gromacs trajectory with jupyter? Hai Nguyen
[gmx-users] Average exchange probability when extending REMD OuyangYanhua
[gmx-users] Average exchange probability when extending REMD OuyangYanhua
[gmx-users] converting the frcmod file and off file to gromacs OuyangYanhua
[gmx-users] converting the frcmod file and off file to gromacs OuyangYanhua
[gmx-users] converting the frcmod file and off file to gromacs OuyangYanhua
[gmx-users] error when continuing the REMD OuyangYanhua
[gmx-users] Non-bonded energy ABANTIKA PAL
[gmx-users] Non-bonded energy ABANTIKA PAL
[gmx-users] Is charmm GUI ideal for membrane building Sotirios Dionysios I. Papadatos
[gmx-users] Cross correlation map of residues Qasim Pars
[gmx-users] allosteric effect Qasim Pars
[gmx-users] allosteric effect Qasim Pars
[gmx-users] Cross correlation map of residues Qasim Pars
[gmx-users] projection on the first two eigenvectors obtained from the concatenated trajectories Qasim Pars
[gmx-users] projection on the first two eigenvectors obtained from the concatenated trajectories Qasim Pars
[gmx-users] distance between two groups Qasim Pars
[gmx-users] Saving time of the coordinates for conformational entropy Qasim Pars
[gmx-users] Saving time of the coordinates for conformational entropy Qasim Pars
[gmx-users] to neutralize the system Qasim Pars
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig Qasim Pars
[gmx-users] least-squares fitting the second structure on the reference structure Qasim Pars
[gmx-users] least-squares fitting the second structure on the reference structure Qasim Pars
[gmx-users] Segmentation Fault (core dumped) in g_mmpbsa polar energy calculation Pavithra
[gmx-users] Segmentation Fault (core dumped) in g_mmpbsa Pavithra
[gmx-users] Segmentation Fault (core dumped) in g_mmpbsa polar energy calculation Pavithra
[gmx-users] itp or top parameters for HEM? Carla Perez
[gmx-users] installation of gromacs as parallel in a system without access to root Atila Petrosian
[gmx-users] installation of gromacs as parallel in a system without access to root Atila Petrosian
[gmx-users] charge of aminoacids in an special pH Atila Petrosian
[gmx-users] Wrote pdb files with previous and current coordinates step 0Segmentation fault Atila Petrosian
[gmx-users] REMD - replicas sampling in temperatures beyond the assigned range NISHA Prakash
[gmx-users] REMD - replicas sampling in temperatures beyond the assigned range NISHA Prakash
[gmx-users] REMD - replicas sampling in temperatures beyond the assigned range NISHA Prakash
[gmx-users] [gmx-developers] GTX 680 non detected on OS X Szilárd Páll
[gmx-users] parallel job Szilárd Páll
[gmx-users] query on performance of GTX 1080 in gromacs Szilárd Páll
[gmx-users] Job Output stops being written during long simulations on HPC cluster Szilárd Páll
[gmx-users] Job Output stops being written during long simulations on HPC cluster Szilárd Páll
[gmx-users] Tesla K80 vs GeForce GTX 980-repost Szilárd Páll
[gmx-users] Tesla K80 vs GeForce GTX 980-repost Szilárd Páll
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Husen R
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Husen R
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Husen R
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Husen R
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Husen R
[gmx-users] How does gromacs checkpoint works Husen R
[gmx-users] How does gromacs checkpoint works Husen R
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Husen R
[gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed Husen R
[gmx-users] How does gromacs checkpoint works Husen R
[gmx-users] making topology file manually Mohsen Ramezanpour
[gmx-users] making topology file manually Mohsen Ramezanpour
[gmx-users] Ring planarity Mohsen Ramezanpour
[gmx-users] Lipid parameterization Mohsen Ramezanpour
[gmx-users] Lipid parameterization Mohsen Ramezanpour
[gmx-users] itp or top parameters for HEM? Jan Riehm
[gmx-users] Relative FEP with restraints Dries Van Rompaey
[gmx-users] Saving trajectory with different output time steps Dries Van Rompaey
[gmx-users] Tesla K80 vs 3 x GTX 980ti Yahya S
[gmx-users] Problems when running gromacs Faust SHI
[gmx-users] stable conformation Sana Saeed
[gmx-users] frame with lowest energy Sana Saeed
[gmx-users] How to run gromacs on gpu? Catarina A. Carvalheda dos Santos
[gmx-users] Simulation in Constant pH simulation ... Catarina A. Carvalheda dos Santos
[gmx-users] Simulation in Constant pH simulation ... Catarina A. Carvalheda dos Santos
[gmx-users] Simulation in Constant pH simulation ... Catarina A. Carvalheda dos Santos
[gmx-users] Software generating gaff for gromacs with am1bcc charges Andrian Saputra
[gmx-users] Software generating gaff for gromacs with am1bcc charges Andrian Saputra
[gmx-users] top parameters for pluronic f127 Andrian Saputra
[gmx-users] top parameters for pluronic f127 Andrian Saputra
[gmx-users] top parameters for pluronic f127 (Andrian Saputra) Andrian Saputra
[gmx-users] installation error gromacs-imd Andrian Saputra
[gmx-users] installation error gromacs-imd Andrian Saputra
[gmx-users] installation error gromacs-imd Andrian Saputra
[gmx-users] installation error gromacs-imd Andrian Saputra
[gmx-users] installation error gromacs-imd Andrian Saputra
[gmx-users] problem compiling template Andrian Saputra
[gmx-users] installation of gromacs as parallel in a system without access to root Andrian Saputra
[gmx-users] interfacing with Gaussian 09 (Mark Abraham) (Groenhof, Gerrit) Andrian Saputra
[gmx-users] Position restrain of structure Md. Imrul Reza Shishir
[gmx-users] Position restrain of structure Md. Imrul Reza Shishir
[gmx-users] Position restrain of of different chain in fibril structure Md. Imrul Reza Shishir
[gmx-users] Position restrain of of different chain in fibril structure Md. Imrul Reza Shishir
[gmx-users] Gromacs tutorial similar to Justin Lemkul's Roshan Shrestha
[gmx-users] trjconv -dump buffer overflow Marlon Sidore
[gmx-users] Non-neutral system with iron-sulfur clusters Marlon Sidore
[gmx-users] Non-neutral system with iron-sulfur clusters Marlon Sidore
[gmx-users] grompp not enough parameters Marlon Sidore
[gmx-users] grompp not enough parameters Marlon Sidore
[gmx-users] converting the frcmod file and off file to gromacs Marlon Sidore
[gmx-users] (no subject) Marlon Sidore
[gmx-users] charge of aminoacids in an special pH Marlon Sidore
[gmx-users] Cross correlation map of residues Smith, Micholas D.
[gmx-users] Running all the processors in HPC Smith, Micholas D.
[gmx-users] gmx gangle selections help Eric Smoll
[gmx-users] Mn/Mn2+ Parameters included in Amberff Vito Spadavecchio
[gmx-users] simulation with new force field David van der Spoel
[gmx-users] Basic Understanding about Gromacs C library David van der Spoel
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig David van der Spoel
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig David van der Spoel
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig David van der Spoel
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig David van der Spoel
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig David van der Spoel
[gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding? David van der Spoel
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig David van der Spoel
[gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding? David van der Spoel
[gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding? David van der Spoel
[gmx-users] g_helixorient Sudera, Prerna (INT)
[gmx-users] How to fix the ends of the protein? Seera Suryanarayana
[gmx-users] Problem in rmsf calculation Seera Suryanarayana
[gmx-users] Extension of simulations Seera Suryanarayana
[gmx-users] Error while re-compiling Gromacs 5.1.2 with GPU and gcc 5.3.1 Diogo Martins de Sá
[gmx-users] Error while re-compiling Gromacs 5.1.2 with GPU and gcc 5.3.1 Diogo Martins de Sá
[gmx-users] Error while re-compiling Gromacs 5.1.2 with GPU and gcc 5.3.1 Diogo Martins de Sá
[gmx-users] Lipid parameterization Piggot T.
[gmx-users] hbond between backbone atoms Ming Tang
[gmx-users] Distance restraint and pull code Hong Tham
[gmx-users] DPPC-DOTAP Mixed Lipid Bilayer Nidhin Thomas
[gmx-users] DPPC-DOTAP Mixed Lipid Bilayer Nidhin Thomas
[gmx-users] DPPC-DOTAP Mixed Lipid Bilayer Nidhin Thomas
[gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 33 Nidhin Thomas
[gmx-users] Decreased Area Per Lipid for Lipid Bilayer obtained from CHARMM-GUI Nidhin Thomas
[gmx-users] Decreased Area/Lipid for Lipid Bilayer from CHARMM-GUI Nidhin Thomas
[gmx-users] Decreased Area/Lipid of Lipid Bilayer from CHARMM-GUI Nidhin Thomas
[gmx-users] Decreased Area/Lipid of Lipid Bilayer for CHARMM-GUI Nidhin Thomas
[gmx-users] Tutorial 2: KALP-15 in DPPC Kyle Titus-Glover
[gmx-users] Tutorial 2: KALP-15 in DPPC Kyle Titus-Glover
[gmx-users] Tutorial 2: KALP-15 in DPPC Kyle Titus-Glover
[gmx-users] Tutorial 2: KALP-15 in DPPC Kyle Titus-Glover
[gmx-users] Tutorial 2: KALP-15 in DPPC Kyle Titus-Glover
[gmx-users] Domain Decomposition does not support simple neighbor searching. Daniele Veclani
[gmx-users] protonation of histidines Tsjerk Wassenaar
[gmx-users] Cross correlation map of residues Tsjerk Wassenaar
[gmx-users] allosteric effect Tsjerk Wassenaar
[gmx-users] error installing trj_cavity with gromacs Tsjerk Wassenaar
[gmx-users] DPPC-DOTAP Mixed Lipid Bilayer Tsjerk Wassenaar
[gmx-users] Fwd: Dodecahedron Box size and Appropriate number of SOL molecules Tsjerk Wassenaar
[gmx-users] projection on the first two eigenvectors obtained from the concatenated trajectories Tsjerk Wassenaar
[gmx-users] Dodecahedron Box size and Appropriate number of SOL molecules Tsjerk Wassenaar
[gmx-users] DPPC-DOTAP Mixed Lipid Bilayer Tsjerk Wassenaar
[gmx-users] DPPC-DOTAP Mixed Lipid Bilayer Tsjerk Wassenaar
[gmx-users] projection on the first two eigenvectors obtained from the concatenated trajectories Tsjerk Wassenaar
[gmx-users] Simulating a protein dimer Tsjerk Wassenaar
[gmx-users] PCA problems Tsjerk Wassenaar
[gmx-users] PCA problems Tsjerk Wassenaar
[gmx-users] RMSD question Tsjerk Wassenaar
[gmx-users] PCA problems Tsjerk Wassenaar
[gmx-users] PCA problems Tsjerk Wassenaar
[gmx-users] Saving time of the coordinates for conformational entropy Tsjerk Wassenaar
[gmx-users] How many times should I do Umbrella Sampling Tsjerk Wassenaar
[gmx-users] Is charmm GUI ideal for membrane building Tsjerk Wassenaar
[gmx-users] Is charmm GUI ideal for membrane building Tsjerk Wassenaar
[gmx-users] to neutralize the system Tsjerk Wassenaar
[gmx-users] Calculating Eccentricity Tsjerk Wassenaar
[gmx-users] SOLVED: Re: helixorient, jacobi iteration or junk output...? Tsjerk Wassenaar
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig Tsjerk Wassenaar
[gmx-users] least-squares fitting the second structure on the reference structure Tsjerk Wassenaar
[gmx-users] wrap only in XZ? Tsjerk Wassenaar
[gmx-users] PCA and gmx analyze Tsjerk Wassenaar
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig Billy Williams-Noonan
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig Billy Williams-Noonan
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig Billy Williams-Noonan
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig Billy Williams-Noonan
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig Billy Williams-Noonan
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig Billy Williams-Noonan
[gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig Billy Williams-Noonan
[gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding? Billy Williams-Noonan
[gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding? Billy Williams-Noonan
[gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding? Billy Williams-Noonan
[gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding? Billy Williams-Noonan
[gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding? Billy Williams-Noonan
[gmx-users] GROMOS 54a7 parameters for rare amino acids (eg. beta-alanine) Billy Williams-Noonan
[gmx-users] GROMOS 54a7 parameters for rare amino acids (eg. beta-alanine) Billy Williams-Noonan
[gmx-users] GROMOS 54a7 parameters for rare amino acids (eg. beta-alanine) Billy Williams-Noonan
[gmx-users] Water molecule can not be settled Billy Williams-Noonan
[gmx-users] Binding Energy Billy Williams-Noonan
[gmx-users] MoS2 OPLS-AA Parameterization Barrett Worley
[gmx-users] Analyse REMD YanhuaOuyang
[gmx-users] force filed parameters for phosphoserine with gromaces YanhuaOuyang
[gmx-users] force filed parameters for phosphoserine with gromaces YanhuaOuyang
[gmx-users] Extending the REMD YanhuaOuyang
[gmx-users] Extending the REMD YanhuaOuyang
[gmx-users] bug/help - pure charge transformation using fep-lambdas=1.0 Camila Zanette
[gmx-users] PMF steadily increasing Lukas Zimmermann
[gmx-users] PMF steadily increasing Lukas Zimmermann
[gmx-users] PMF steadily increasing Lukas Zimmermann
[gmx-users] rmsdist Sanja Zivanovic
[gmx-users] Errors on running simulation in Cluster dammar badu
[gmx-users] Information about different analysis tools in Gromacs anu chandra
[gmx-users] Umbrella sampling Tutorial by Dr. Lemkul amitbehra at chemeng.iisc.ernet.in
[gmx-users] Umbrella Sampling (Justin Lemkul) amitbehra at chemeng.iisc.ernet.in
[gmx-users] Is charmm GUI ideal for membrane building amitbehra at chemeng.iisc.ernet.in
[gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 57 amitbehra at chemeng.iisc.ernet.in
[gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 59 amitbehra at chemeng.iisc.ernet.in
[gmx-users] gmx rdf amitbehra at chemeng.iisc.ernet.in
[gmx-users] Tutorial #3 : Umbrella Sampling (By Justin Lemkul) amitbehra at chemeng.iisc.ernet.in
[gmx-users] gmx convert-tpr amitbehra at chemeng.iisc.ernet.in
[gmx-users] TRR file in VMD amitbehra at chemeng.iisc.ernet.in
[gmx-users] an error for mdrun 15110700076 at fudan.edu.cn
[gmx-users] a problem for installing gromacs-5.1.2 15110700076 at fudan.edu.cn
[gmx-users] pdb2gmx error bharat gupta
[gmx-users] Using Glycam forcefield and amber forcefield together bharat gupta
[gmx-users] Using Gromacs on a cluster bharat gupta
[gmx-users] two protein h.mousavi
[gmx-users] PCA problems ingram
[gmx-users] PCA problems ingram
[gmx-users] RMSD question ingram
[gmx-users] PCA problems ingram
[gmx-users] Checksum and .log error ingram
[gmx-users] Checksum and .log error ingram
[gmx-users] Checksum and .log error ingram
[gmx-users] restart error ingram
[gmx-users] restart error ingram
[gmx-users] Open-closed transition in a dimeric enzyme, WTM simulations tarak karmakar
[gmx-users] unusual behavior of CV in steered MD (gromacs+plumed) tarak karmakar
[gmx-users] Open-closed transition in a dimeric enzyme, WTM simulations tarak karmakar
[gmx-users] interpreting the output of gmx tune_pme jing liang
[gmx-users] Diffusion constant pari lotfi
[gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 157 pari lotfi
[gmx-users] Gromacs 5.1 build for windows 8. Cygwin compatibility with CUDA/GPU acceleration. timothy.dubbs at louisville.edu
[gmx-users] How to get an infinite DNA topology elixer at mail.ustc.edu.cn
[gmx-users] Paradox in .mdp parameter value between Justin's tutorial and martini's one khourshaeishargh at mech.sharif.ir
[gmx-users] Compressibility in .mdp khourshaeishargh at mech.sharif.ir
[gmx-users] query on performance of GTX 1080 in gromacs jagannath mondal
[gmx-users] allosteric effect jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] Simulating a protein dimer jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] PCA problems jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] PCA problems jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] PCA problems jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] minor edits to a .gro file jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] mdrun error mahdiyeh poorsargol
[gmx-users] charmm36 ions fix gromacs query
[gmx-users] charmm36 ions fix gromacs query
[gmx-users] charmm36 ions fix gromacs query
[gmx-users] charmm36 ions fix gromacs query
[gmx-users] charmm36 ions fix gromacs query
[gmx-users] How to run gromacs on gpu? shahab shariati
[gmx-users] Error while generating ions.tpr file kamakshi sikka
[gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 1 kamakshi sikka
[gmx-users] Error while generating ions.tpr file kamakshi sikka
[gmx-users] allosteric effect sun
[gmx-users] Simulating a protein dimer sun
[gmx-users] PCA sun
[gmx-users] Block averaging sun
[gmx-users] Block averaging sun
[gmx-users] Block averaging sun
[gmx-users] Block averaging sun
[gmx-users] PCA and gmx analyze sun
[gmx-users] charge assign acetaminophen elham tazikeh
[gmx-users] GPU acceleration יוכבד
[gmx-users] GPU acceleration יוכבד
[gmx-users] GPU acceleration יוכבד
[gmx-users] Time of NPT and NVT running ‪Mohammad Roostaie‬ ‪
[gmx-users] Gaussian/GROMACS 张卓
[gmx-users] problem about distance restraint in REMD simulation 曾娟
[gmx-users] problem about distance restraint in REMD simulation 曾娟
[gmx-users] How to ignore hydrogen of one part of a pdb file by pdb2gmx 柯谱

Last message date: Thu Jun 30 18:22:47 CEST 2016
Archived on: Thu Jun 30 18:22:48 CEST 2016

Messages sorted by: [ thread ] [ subject ] [ date ]
More info on this list...

This archive was generated by Pipermail 0.09 (Mailman edition).