June 2016 Archives by thread

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Starting: Wed Jun 1 00:34:52 CEST 2016
Ending: Thu Jun 30 18:22:47 CEST 2016
Messages: 719

• [gmx-users] Error while re-compiling Gromacs 5.1.2 with GPU and gcc 5.3.1   Diogo Martins de Sá
  • [gmx-users] Error while re-compiling Gromacs 5.1.2 with GPU and gcc 5.3.1   Mark Abraham
• [gmx-users] Error while generating ions.tpr file   kamakshi sikka
  • [gmx-users] Error while generating ions.tpr file   Mark Abraham
    • [gmx-users] Error while generating ions.tpr file   Mark Abraham
• [gmx-users] [gmx-developers] GTX 680 non detected on OS X   Uliano Guerrini
  • [gmx-users] [gmx-developers] GTX 680 non detected on OS X   Mark Abraham
    • [gmx-users] [gmx-developers] GTX 680 non detected on OS X   Uliano Guerrini
      • [gmx-users] [gmx-developers] GTX 680 non detected on OS X   Uliano Guerrini
      • [gmx-users] [gmx-developers] GTX 680 non detected on OS X   Szilárd Páll
      • [gmx-users] [gmx-developers] GTX 680 non detected on OS X   Uliano Guerrini
• [gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 1   kamakshi sikka
• [gmx-users] trjconv -dump buffer overflow   Marlon Sidore
• [gmx-users] Time of NPT and NVT running   ‪Mohammad Roostaie‬ ‪
• [gmx-users] Clarity on TI free energy terms   Nash, Anthony
  • [gmx-users] Clarity on TI free energy terms   Hannes Loeffler
    • [gmx-users] Clarity on TI free energy terms   Nash, Anthony
      • [gmx-users] Clarity on TI free energy terms   Hannes Loeffler
      • [gmx-users] Clarity on TI free energy terms   Nash, Anthony
      • [gmx-users] Clarity on TI free energy terms   Hannes Loeffler
      • [gmx-users] Clarity on TI free energy terms   Nash, Anthony
      • [gmx-users] Clarity on TI free energy terms   Hannes Loeffler
      • [gmx-users] Clarity on TI free energy terms   Nash, Anthony
      • [gmx-users] Clarity on TI free energy terms   Nash, Anthony
      • [gmx-users] Clarity on TI free energy terms   Hannes Loeffler
      • [gmx-users] Clarity on TI free energy terms   Nash, Anthony
      • [gmx-users] Clarity on TI free energy terms   Hannes Loeffler
• [gmx-users] Segmentation Fault (core dumped) in g_mmpbsa polar energy calculation   Pavithra
  • [gmx-users] Segmentation Fault (core dumped) in g_mmpbsa polar energy calculation   Mark Abraham
  • [gmx-users] Segmentation Fault (core dumped) in g_mmpbsapolar energy calculation   Nikhil Maroli
  • [gmx-users] Segmentation Fault (core dumped) in g_mmpbsapolar energy calculation   Nikhil Maroli
    • [gmx-users] Segmentation Fault (core dumped) in g_mmpbsapolar energy calculation   Mark Abraham
• [gmx-users] Error while generating ions.tpr file   kamakshi sikka
• [gmx-users] Distance restraint and pull code   HongTham
  • [gmx-users] Distance restraint and pull code   Justin Lemkul
    • [gmx-users] Distance restraint and pull code   HongTham
      • [gmx-users] Distance restraint and pull code   HongTham
      • [gmx-users] Distance restraint and pull code   Justin Lemkul
      • [gmx-users] Distance restraint and pull code   Hong Tham
      • [gmx-users] Distance restraint and pull code   Justin Lemkul
      • [gmx-users] Distance restraint and pull code   HongTham
• [gmx-users] Error while re-compiling Gromacs 5.1.2 with GPU and gcc 5.3.1   Diogo Martins de Sá
  • [gmx-users] Error while re-compiling Gromacs 5.1.2 with GPU and gcc 5.3.1   Diogo Martins de Sá
• [gmx-users] MoS2 OPLS-AA Parameterization   Barrett Worley
• [gmx-users] How to get an infinite DNA topology   elixer at mail.ustc.edu.cn
  • [gmx-users] How to get an infinite DNA topology   Justin Lemkul
• [gmx-users] Segmentation Fault (core dumped) in g_mmpbsa   Pavithra
• [gmx-users] Analyse REMD   YanhuaOuyang
• [gmx-users] Position restrain of structure   Md. Imrul Reza Shishir
  • [gmx-users] Position restrain of structure   Justin Lemkul
    • [gmx-users] Position restrain of structure   Md. Imrul Reza Shishir
• [gmx-users] Segmentation Fault (core dumped) in g_mmpbsa polar energy calculation   Pavithra
• [gmx-users] gromacs.org_gmx-users Digest, Vol 145, Issue 93   Sanket Ghawali
  • [gmx-users] Simulating conjugated protein   Justin Lemkul
• [gmx-users] force filed parameters for phosphoserine with gromaces   YanhuaOuyang
  • [gmx-users] force filed parameters for phosphoserine with gromaces   Justin Lemkul
    • [gmx-users] force filed parameters for phosphoserine with gromaces   YanhuaOuyang
      • [gmx-users] force filed parameters for phosphoserine with gromaces   Justin Lemkul
• [gmx-users] protonation of histidines   Irem Altan
  • [gmx-users] protonation of histidines   Tsjerk Wassenaar
    • [gmx-users] protonation of histidines   Irem Altan
      • [gmx-users] protonation of histidines   Justin Lemkul
• [gmx-users] bug/help - pure charge transformation using fep-lambdas=1.0   Camila Zanette
• [gmx-users] SPME energy   Parvez Mh
  • [gmx-users] SPME energy   Mark Abraham
• [gmx-users] Cross correlation map of residues   Qasim Pars
  • [gmx-users] Cross correlation map of residues   Tsjerk Wassenaar
    • [gmx-users] Cross correlation map of residues   Florent Hédin
      • [gmx-users] Cross correlation map of residues   Qasim Pars
      • [gmx-users] Cross correlation map of residues   Smith, Micholas D.
      • [gmx-users] Cross correlation map of residues   Florent Hédin
• [gmx-users] allosteric effect   Qasim Pars
  • [gmx-users] allosteric effect   Tsjerk Wassenaar
    • [gmx-users] allosteric effect   jkrieger at mrc-lmb.cam.ac.uk
      • [gmx-users] allosteric effect   Qasim Pars
      • [gmx-users] allosteric effect   sun
• [gmx-users] Software generating gaff for gromacs with am1bcc charges   Andrian Saputra
  • [gmx-users] Software generating gaff for gromacs with am1bcc charges   Hannes Loeffler
    • [gmx-users] Software generating gaff for gromacs with am1bcc charges   Andrian Saputra
• [gmx-users] multiple nodes, GPUs on a Cray system   Jan Domanski
• [gmx-users] top parameters for pluronic f127   SAKO MIRZAIE
  • [gmx-users] top parameters for pluronic f127   SAKO MIRZAIE
  • [gmx-users] top parameters for pluronic f127   SAKO MIRZAIE
• [gmx-users] query on performance of GTX 1080 in gromacs   Jagannath Mondal
• [gmx-users] top parameters for pluronic f127   SAKO MIRZAIE
  • [gmx-users] top parameters for pluronic f127   Alan
    • [gmx-users] top parameters for pluronic f127   Andrian Saputra
      • [gmx-users] top parameters for pluronic f127   Andrian Saputra
• [gmx-users] error installing trj_cavity with gromacs   Williams Miranda
  • [gmx-users] error installing trj_cavity with gromacs   Tsjerk Wassenaar
    • [gmx-users] error installing trj_cavity with gromacs   Williams Miranda
• [gmx-users] gen-pairs   Alexander Alexander
  • [gmx-users] gen-pairs   Justin Lemkul
    • [gmx-users] gen-pairs   Alexander Alexander
      • [gmx-users] gen-pairs   Justin Lemkul
      • [gmx-users] gen-pairs   Alexander Alexander
      • [gmx-users] gen-pairs   Justin Lemkul
      • [gmx-users] gen-pairs   Alexander Alexander
      • [gmx-users] gen-pairs   Justin Lemkul
• [gmx-users] Gromacs in Mac OS 10.11 (el capitan)   Eudes Fileti
• [gmx-users] Freeze-Exclude a molecule   Sajjad Kavyani
• [gmx-users] Segmentation fault after merging two equilibrated molecules!   Sajjad Kavyani
  • [gmx-users] Segmentation fault after merging two equilibrated molecules!   André Farias de Moura
• [gmx-users] Segmentation fault after merging two equilibrated molecules!   Kavyani, S.
• [gmx-users] Gromacs in Mac OS 10.11 (el capitan) (Eudes Fileti) (SOLVED)   Eudes Fileti
• [gmx-users] top parameters for pluronic f127 (Andrian Saputra)   ABEL Stephane 175950
  • [gmx-users] top parameters for pluronic f127 (Andrian Saputra)   Andrian Saputra
• [gmx-users] Non-bonded energy   ABANTIKA PAL
  • [gmx-users] Non-bonded energy   Justin Lemkul
    • [gmx-users] Non-bonded energy   ABANTIKA PAL
      • [gmx-users] Non-bonded energy   Justin Lemkul
• [gmx-users] gmx gangle selections help   Eric Smoll
  • [gmx-users] gmx gangle selections help   Teemu Murtola
• [gmx-users] hbond occupancy   Faegheh Kazemy
• [gmx-users] DPPC-DOTAP Mixed Lipid Bilayer   Nidhin Thomas
  • [gmx-users] DPPC-DOTAP Mixed Lipid Bilayer   Tsjerk Wassenaar
• [gmx-users] Position restrain of of different chain in fibril structure   Md. Imrul Reza Shishir
  • [gmx-users] Position restrain of of different chain in fibril structure   Justin Lemkul
    • [gmx-users] Position restrain of of different chain in fibril structure   Md. Imrul Reza Shishir
      • [gmx-users] Position restrain of of different chain in fibril structure   Justin Lemkul
• [gmx-users] cannot output all the structures of one cluster   Zhenyu Meng
• [gmx-users] How to fix the ends of the protein?   Seera Suryanarayana
  • [gmx-users] How to fix the ends of the protein?   Nikhil Maroli
• [gmx-users] Fwd: Dodecahedron Box size and Appropriate number of SOL molecules   Apramita Chand
  • [gmx-users] Fwd: Dodecahedron Box size and Appropriate number of SOL molecules   Tsjerk Wassenaar
• [gmx-users] Umbrella sampling Tutorial by Dr. Lemkul   amitbehra at chemeng.iisc.ernet.in
  • [gmx-users] Umbrella sampling Tutorial by Dr. Lemkul   Justin Lemkul
• [gmx-users] Dodecahedron Box size and Appropriate number of SOL molecules   Apramita Chand
  • [gmx-users] Dodecahedron Box size and Appropriate number of SOL molecules   Tsjerk Wassenaar
• [gmx-users] projection on the first two eigenvectors obtained from the concatenated trajectories   Qasim Pars
  • [gmx-users] projection on the first two eigenvectors obtained from the concatenated trajectories   Tsjerk Wassenaar
    • [gmx-users] projection on the first two eigenvectors obtained from the concatenated trajectories   Qasim Pars
      • [gmx-users] projection on the first two eigenvectors obtained from the concatenated trajectories   Tsjerk Wassenaar
• [gmx-users] Simulating a protein dimer   Biplab Ghosh
  • [gmx-users] Simulating a protein dimer   sun
    • [gmx-users] Simulating a protein dimer   jkrieger at mrc-lmb.cam.ac.uk
      • [gmx-users] Simulating a protein dimer   Tsjerk Wassenaar
• [gmx-users] automation of Free Energy calculations: webinar   Rossen Apostolov
• [gmx-users] problem installing gromacs in ubuntu   Jagannath Mondal
• [gmx-users] DPPC-DOTAP Mixed Lipid Bilayer   Nidhin Thomas
  • [gmx-users] DPPC-DOTAP Mixed Lipid Bilayer   Tsjerk Wassenaar
• [gmx-users] making topology file manually   Mohsen Ramezanpour
  • [gmx-users] making topology file manually   Justin Lemkul
    • [gmx-users] making topology file manually   Mohsen Ramezanpour
      • [gmx-users] making topology file manually   Justin Lemkul
• [gmx-users] itp or top parameters for HEM?   Carla Perez
  • [gmx-users] itp or top parameters for HEM?   Florent Hédin
  • [gmx-users] itp or top parameters for HEM?   Jan Riehm
• [gmx-users] interpreting the output of gmx tune_pme   jing liang
  • [gmx-users] interpreting the output of gmx tune_pme   Kutzner, Carsten
• [gmx-users] distance between two groups   Qasim Pars
  • [gmx-users] distance between two groups   Justin Lemkul
    • [gmx-users] distance between two groups   Teemu Murtola
• [gmx-users] Angle restraint of a peptide   Khuong Truong Gia
• [gmx-users] stable conformation   Sana Saeed
• [gmx-users] DPPC-DOTAP Mixed Lipid Bilayer   Nidhin Thomas
  • [gmx-users] DPPC-DOTAP Mixed Lipid Bilayer   Tsjerk Wassenaar
• [gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 33   Nidhin Thomas
• [gmx-users] PCA problems   ingram
  • [gmx-users] PCA problems   Tsjerk Wassenaar
  • [gmx-users] PCA problems   jkrieger at mrc-lmb.cam.ac.uk
    • [gmx-users] PCA problems   ingram
    • [gmx-users] PCA problems   Tsjerk Wassenaar
      • [gmx-users] PCA problems   jkrieger at mrc-lmb.cam.ac.uk
      • [gmx-users] PCA problems   Tsjerk Wassenaar
      • [gmx-users] PCA problems   Matthias Ernst
      • [gmx-users] PCA problems   jkrieger at mrc-lmb.cam.ac.uk
      • [gmx-users] PCA problems   Antonio Baptista
      • [gmx-users] PCA problems   Tsjerk Wassenaar
      • [gmx-users] PCA problems   Antonio Baptista
      • [gmx-users] PCA problems   ingram
• [gmx-users] RMSD question   ingram
  • [gmx-users] RMSD question   Tsjerk Wassenaar
• [gmx-users] Domain Decomposition does not support simple neighbor searching.   Daniele Veclani
  • [gmx-users] Domain Decomposition does not support simple neighbor searching.   Justin Lemkul
• [gmx-users] Constant-velocity pulling   Sajjad Kavyani
  • [gmx-users] Constant-velocity pulling   Justin Lemkul
• [gmx-users] g_helixorient   Sudera, Prerna (INT)
• [gmx-users] Saving time of the coordinates for conformational entropy   Qasim Pars
  • [gmx-users] Saving time of the coordinates for conformational entropy   Tsjerk Wassenaar
    • [gmx-users] Saving time of the coordinates for conformational entropy   Qasim Pars
• [gmx-users] Calculating avergae structure from the simulation   Agnivo Gosai
  • [gmx-users] Calculating avergae structure from the simulation   Justin Lemkul
  • [gmx-users] Calculating avergae structure from the simulation   Chandan Choudhury
• [gmx-users] How many times should I do Umbrella Sampling   Agnivo Gosai
  • [gmx-users] How many times should I do Umbrella Sampling   André Farias de Moura
    • [gmx-users] How many times should I do Umbrella Sampling   Tsjerk Wassenaar
• [gmx-users] frame with lowest energy   Sana Saeed
  • [gmx-users] frame with lowest energy   Justin Lemkul
    • [gmx-users] frame with lowest energy   Alexander Alexander
• [gmx-users] Empty output files from gmx helix?   yunshi11 .
• [gmx-users] installation error gromacs-imd   Andrian Saputra
  • [gmx-users] installation error gromacs-imd   Kutzner, Carsten
    • [gmx-users] installation error gromacs-imd   Andrian Saputra
      • [gmx-users] installation error gromacs-imd   Kutzner, Carsten
      • [gmx-users] installation error gromacs-imd   Andrian Saputra
      • [gmx-users] installation error gromacs-imd   Mark Abraham
      • [gmx-users] installation error gromacs-imd   Andrian Saputra
• [gmx-users] gmx hbond - specify precise atom names involved   Erik Marklund
• [gmx-users] Paradox in .mdp parameter value between Justin's tutorial and martini's one   khourshaeishargh at mech.sharif.ir
  • [gmx-users] Paradox in .mdp parameter value between Justin's tutorial and martini's one   Justin Lemkul
• [gmx-users] simulation with new force field   Chen Jingzhi
  • [gmx-users] simulation with new force field   David van der Spoel
    • [gmx-users] 答复: simulation with new force field   Chen Jingzhi
• [gmx-users] Regarding Electrostatic interaction energy   Sathish Kumar
  • [gmx-users] Regarding Electrostatic interaction energy   Justin Lemkul
• [gmx-users] Ring planarity   Mohsen Ramezanpour
  • [gmx-users] Ring planarity   Justin Lemkul
• [gmx-users] minor edits to a .gro file   Nash, Anthony
  • [gmx-users] minor edits to a .gro file   Justin Lemkul
  • [gmx-users] minor edits to a .gro file   jkrieger at mrc-lmb.cam.ac.uk
    • [gmx-users] minor edits to a .gro file   Nash, Anthony
      • [gmx-users] minor edits to a .gro file   Mark Abraham
      • [gmx-users] minor edits to a .gro file   Nash, Anthony
      • [gmx-users] minor edits to a .gro file   Mark Abraham
      • [gmx-users] minor edits to a .gro file   Nash, Anthony
• [gmx-users] Umbrella Sampling (Justin Lemkul)   amitbehra at chemeng.iisc.ernet.in
  • [gmx-users] Umbrella Sampling (Justin Lemkul)   Nikhil Maroli
• [gmx-users] Missing oxyz in vmx distance output   Nash, Anthony
• [gmx-users] how to freeze an arbitrary set of atoms   Irem Altan
  • [gmx-users] how to freeze an arbitrary set of atoms   Mark Abraham
• [gmx-users] interfacing with Gaussian 09   Clinton King
  • [gmx-users] interfacing with Gaussian 09   Mark Abraham
    • [gmx-users] interfacing with Gaussian 09   Mark Abraham
• [gmx-users] using trjconv while the simulation is still running   Irem Altan
  • [gmx-users] using trjconv while the simulation is still running   Mark Abraham
• [gmx-users] Problem understanding internode communication   Ameya Godbole
• [gmx-users] problem compiling template   Michael Brunsteiner
  • [gmx-users] problem compiling template   Teemu Murtola
    • [gmx-users] problem compiling template   Andrian Saputra
• [gmx-users] Open-closed transition in a dimeric enzyme, WTM simulations   tarak karmakar
  • [gmx-users] Open-closed transition in a dimeric enzyme, WTM simulations   Erik Marklund
    • [gmx-users] Open-closed transition in a dimeric enzyme, WTM simulations   tarak karmakar
• [gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 49   Clinton King
• [gmx-users] interfacing with Gaussian 09   Clinton King
• [gmx-users] Compressibility in .mdp   khourshaeishargh at mech.sharif.ir
• [gmx-users] An extra charge   Alexander Alexander
  • [gmx-users] An extra charge   Mark Abraham
    • [gmx-users] An extra charge   Alexander Alexander
      • [gmx-users] An extra charge   Mark Abraham
      • [gmx-users] An extra charge   Alexander Alexander
      • [gmx-users] An extra charge   Mark Abraham
      • [gmx-users] An extra charge   Alexander Alexander
      • [gmx-users] An extra charge   Mark Abraham
• [gmx-users] steered md - pushing   Tamas Hegedus
• [gmx-users] interfacing with Gaussian 09 (Mark Abraham)   Groenhof, Gerrit
• [gmx-users] adding extra ions to charmm gui output   Nikhil Maroli
• [gmx-users] problem about distance restraint in REMD simulation   曾娟
  • [gmx-users] problem about distance restraint in REMD simulation   Mark Abraham
    • [gmx-users] problem about distance restraint in REMD simulation   曾娟
      • [gmx-users] problem about distance restraint in REMD simulation   Christopher Neale
• [gmx-users] Extending the REMD   YanhuaOuyang
  • [gmx-users] Extending the REMD   Mark Abraham
    • [gmx-users] Extending the REMD   YanhuaOuyang
      • [gmx-users] Extending the REMD   Mark Abraham
• [gmx-users] an error for mdrun   15110700076 at fudan.edu.cn
  • [gmx-users] an error for mdrun   Mark Abraham
• [gmx-users] mdrun error   mahdiyeh poorsargol
  • [gmx-users] mdrun error   Mark Abraham
• [gmx-users] Decreased Area Per Lipid for Lipid Bilayer obtained from CHARMM-GUI   Nidhin Thomas
  • [gmx-users] Decreased Area Per Lipid for Lipid Bilayer obtained from CHARMM-GUI   Christopher Neale
• [gmx-users] Is charmm GUI ideal for membrane building   amitbehra at chemeng.iisc.ernet.in
  • [gmx-users] Is charmm GUI ideal for membrane building   Tsjerk Wassenaar
    • [gmx-users] Is charmm GUI ideal for membrane building   Sotirios Dionysios I. Papadatos
      • [gmx-users] Is charmm GUI ideal for membrane building   Tsjerk Wassenaar
• [gmx-users] installation of gromacs as parallel in a system without access to root   Atila Petrosian
  • [gmx-users] installation of gromacs as parallel in a system without access to root   Mark Abraham
• [gmx-users] installation of gromacs as parallel in a system without access to root   Atila Petrosian
  • [gmx-users] installation of gromacs as parallel in a system without access to root   Andrian Saputra
  • [gmx-users] installation of gromacs as parallel in a system without access to root   Mark Abraham
• [gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 57   amitbehra at chemeng.iisc.ernet.in
  • [gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 57   Mark Abraham
• [gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 59   amitbehra at chemeng.iisc.ernet.in
• [gmx-users] water density   Alexander Alexander
  • [gmx-users] water density   Christopher Neale
• [gmx-users] interfacing with Gaussian 09 (Mark Abraham) (Groenhof, Gerrit)   Clinton King
  • [gmx-users] interfacing with Gaussian 09 (Mark Abraham) (Groenhof, Gerrit)   Andrian Saputra
• [gmx-users] Decreased Area/Lipid for Lipid Bilayer from CHARMM-GUI   Nidhin Thomas
  • [gmx-users] Decreased Area/Lipid for Lipid Bilayer from CHARMM-GUI   Justin Lemkul
• [gmx-users] Decreased Area/Lipid of Lipid Bilayer from CHARMM-GUI   Nidhin Thomas
  • [gmx-users] Decreased Area/Lipid of Lipid Bilayer from CHARMM-GUI   Christopher Neale
• [gmx-users] Gromacs multisubunit defragmentation   Muhammad Hagras
  • [gmx-users] Gromacs multisubunit defragmentation   Justin Lemkul
    • [gmx-users] Gromacs multisubunit defragmentation   Muhammad Hagras
      • [gmx-users] Gromacs multisubunit defragmentation   Justin Lemkul
      • [gmx-users] Gromacs multisubunit defragmentation   Muhammad Hagras
      • [gmx-users] Gromacs multisubunit defragmentation   Justin Lemkul
• [gmx-users] interfacing with Gaussian 09   Groenhof, Gerrit
• [gmx-users] (no subject)   Sepideh Momeninezhad
  • [gmx-users] (no subject)   Justin Lemkul
• [gmx-users] Non-neutral system with iron-sulfur clusters   Marlon Sidore
  • [gmx-users] Non-neutral system with iron-sulfur clusters   Justin Lemkul
    • [gmx-users] Non-neutral system with iron-sulfur clusters   Marlon Sidore
      • [gmx-users] Non-neutral system with iron-sulfur clusters   Justin Lemkul
• [gmx-users] How to run gromacs on gpu?   shahab shariati
  • [gmx-users] How to run gromacs on gpu?   Catarina A. Carvalheda dos Santos
• [gmx-users] (no subject)   Sepideh Momeninezhad
  • [gmx-users] (no subject)   Sarath Chandra
• [gmx-users] Simple gas-phase minimization help   Tarick E
  • [gmx-users] Simple gas-phase minimization help   Justin Lemkul
    • [gmx-users] Simple gas-phase minimization help   Tarick E
      • [gmx-users] Simple gas-phase minimization help   Justin Lemkul
      • [gmx-users] Simple gas-phase minimization help   Tarick E
      • [gmx-users] Simple gas-phase minimization help   Mark Abraham
      • [gmx-users] Simple gas-phase minimization help   Tarick E
      • [gmx-users] Simple gas-phase minimization help   Justin Lemkul
• [gmx-users] Lipid parameterization   Mohsen Ramezanpour
  • [gmx-users] Lipid parameterization   Justin Lemkul
  • [gmx-users] Lipid parameterization   Christopher Neale
    • [gmx-users] Lipid parameterization   Justin Lemkul
      • [gmx-users] Lipid parameterization   Mohsen Ramezanpour
      • [gmx-users] Lipid parameterization   Christopher Neale
      • [gmx-users] Lipid parameterization   Justin Lemkul
      • [gmx-users] Lipid parameterization   Piggot T.
• [gmx-users] Decreased Area/Lipid of Lipid Bilayer for CHARMM-GUI   Nidhin Thomas
  • [gmx-users] Decreased Area/Lipid of Lipid Bilayer for CHARMM-GUI   Justin Lemkul
• [gmx-users] to neutralize the system   Qasim Pars
• [gmx-users] How to add solvent in a Biphasic Systems ?   Jinfeng Huang
  • [gmx-users] How to add solvent in a Biphasic Systems ?   Mark Abraham
• [gmx-users] to neutralize the system   Tsjerk Wassenaar
• [gmx-users] Calculating Eccentricity   Sanket Ghawali
  • [gmx-users] Calculating Eccentricity   Tsjerk Wassenaar
  • [gmx-users] Calculating Eccentricity   Erik Marklund
• [gmx-users] to neutralize the system   Groenhof, Gerrit
  • [gmx-users] to neutralize the system   Alexander Alexander
    • [gmx-users] to neutralize the system   Mark Abraham
      • [gmx-users] to neutralize the system   Alexander Alexander
      • [gmx-users] to neutralize the system   Mark Abraham
      • [gmx-users] to neutralize the system   Alexander Alexander
      • [gmx-users] to neutralize the system   Alexander Alexander
      • [gmx-users] to neutralize the system   Justin Lemkul
• [gmx-users] h_bond   Shahid Nayeem
  • [gmx-users] h_bond   Justin Lemkul
• [gmx-users] Something weird with shell particle dynamics   Luca Banetta
  • [gmx-users] Something weird with shell particle dynamics   Mark Abraham
  • [gmx-users] Something weird with shell particle dynamics   Justin Lemkul
    • [gmx-users] Something weird with shell particle dynamics   Luca Banetta
• [gmx-users] net charge correction   Michael Brunsteiner
  • [gmx-users] net charge correction   Mark Abraham
• [gmx-users] Regarding installation in gpu   SOUVIK MONDAL
  • [gmx-users] Regarding installation in gpu   Justin Lemkul
    • [gmx-users] Regarding installation in gpu   SOUVIK MONDAL
      • [gmx-users] Regarding installation in gpu   Justin Lemkul
      • [gmx-users] Regarding installation in gpu   Mark Abraham
• [gmx-users] Fwd: Re: Dimeric structure strangely separated   Pedro Lacerda
  • [gmx-users] Fwd: Re: Dimeric structure strangely separated   Justin Lemkul
    • [gmx-users] Fwd: Re: Dimeric structure strangely separated   Pedro Lacerda
      • [gmx-users] Fwd: Re: Dimeric structure strangely separated   Justin Lemkul
      • [gmx-users] Fwd: Re: Dimeric structure strangely separated   Pedro Lacerda
      • [gmx-users] Fwd: Re: Dimeric structure strangely separated   Justin Lemkul
      • [gmx-users] Fwd: Re: Dimeric structure strangely separated   Pedro Lacerda
      • [gmx-users] Fwd: Re: Dimeric structure strangely separated   Justin Lemkul
      • [gmx-users] Fwd: Re: Dimeric structure strangely separated   Pedro Lacerda
• [gmx-users] Average exchange probability when extending REMD   OuyangYanhua
  • [gmx-users] Average exchange probability when extending REMD   Mark Abraham
    • [gmx-users] Average exchange probability when extending REMD   OuyangYanhua
      • [gmx-users] Average exchange probability when extending REMD   Mark Abraham
• [gmx-users] grompp not enough parameters   Marlon Sidore
  • [gmx-users] grompp not enough parameters   Justin Lemkul
    • [gmx-users] grompp not enough parameters   Marlon Sidore
• [gmx-users] Simulation in Constant pH simulation ...   Nikhil Maroli
  • [gmx-users] Simulation in Constant pH simulation ...   Catarina A. Carvalheda dos Santos
    • [gmx-users] Simulation in Constant pH simulation ...   Nikhil Maroli
      • [gmx-users] Simulation in Constant pH simulation ...   Justin Lemkul
      • [gmx-users] Simulation in Constant pH simulation ...   Nikhil Maroli
      • [gmx-users] Simulation in Constant pH simulation ...   Justin Lemkul
      • [gmx-users] Simulation in Constant pH simulation ...   Catarina A. Carvalheda dos Santos
• [gmx-users] Gromacs 5.1 insert-molecules - Generating bad contacts?   Dan Gil
  • [gmx-users] Gromacs 5.1 insert-molecules - Generating bad contacts?   Mark Abraham
• [gmx-users] electrophysiology builder   Nikhil Maroli
  • [gmx-users] electrophysiology builder   Kutzner, Carsten
    • [gmx-users] electrophysiology builder   Nikhil Maroli
• [gmx-users] grompp not enough parameters   ABEL Stephane 175950
• [gmx-users] PMF steadily increasing   Lukas Zimmermann
  • [gmx-users] PMF steadily increasing   Christopher Neale
    • [gmx-users] PMF steadily increasing   Lukas Zimmermann
      • [gmx-users] PMF steadily increasing   Lukas Zimmermann
      • [gmx-users] PMF steadily increasing   Christopher Neale
• [gmx-users] Calculating Dielectric constant   Life Sciences Inc
• [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Husen R
  • [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Husen R
  • [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Mark Abraham
    • [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Husen R
      • [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Mark Abraham
      • [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Husen R
      • [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Mark Abraham
      • [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Husen R
      • [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Mark Abraham
      • [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Husen R
      • [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Mark Abraham
      • [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Husen R
• [gmx-users] Problem in rmsf calculation   Seera Suryanarayana
  • [gmx-users] Problem in rmsf calculation   Sarath Chandra
• [gmx-users] pdb2gmx error   bharat gupta
  • [gmx-users] pdb2gmx error   Mark Abraham
• [gmx-users] MDRUN crash   Luca Banetta
  • [gmx-users] MDRUN crash   Justin Lemkul
    • [gmx-users] MDRUN crash   Luca Banetta
      • [gmx-users] MDRUN crash   Mark Abraham
      • [gmx-users] MDRUN crash   Luca Banetta
      • [gmx-users] MDRUN crash   Justin Lemkul
      • [gmx-users] MDRUN crash   Luca Banetta
      • [gmx-users] MDRUN crash   Justin Lemkul
• [gmx-users] Checksum and .log error   ingram
  • [gmx-users] Checksum and .log error   Mark Abraham
    • [gmx-users] Checksum and .log error   ingram
      • [gmx-users] Checksum and .log error   Mark Abraham
      • [gmx-users] Checksum and .log error   ingram
• [gmx-users] Dielectric Constant   Life Sciences Inc
  • [gmx-users] Dielectric Constant   Mark Abraham
    • [gmx-users] Dielectric Constant   Life Sciences Inc
      • [gmx-users] Dielectric Constant   Mark Abraham
• [gmx-users] Basic Understanding about Gromacs C library   Murilo Kramar
  • [gmx-users] Basic Understanding about Gromacs C library   Christopher Neale
  • [gmx-users] Basic Understanding about Gromacs C library   David van der Spoel
    • [gmx-users] Basic Understanding about Gromacs C library   Murilo Kramar
• [gmx-users] Total Charge on Guanine molecule by OPLS AA force field is negative   Anurag Dobhal
  • [gmx-users] Total Charge on Guanine molecule by OPLS AA force field is negative   Justin Lemkul
    • [gmx-users] Total Charge on Guanine molecule by OPLS AA force field is negative   Anurag Dobhal
      • [gmx-users] Total Charge on Guanine molecule by OPLS AA force field is negative   Justin Lemkul
      • [gmx-users] Total Charge on Guanine molecule by OPLS AA force field is negative   Anurag Dobhal
• [gmx-users] Gromacs 5.1 - trouble with insert-molecules   Dan Gil
  • [gmx-users] Gromacs 5.1 - trouble with insert-molecules   Mark Abraham
• [gmx-users] compile 2016-beta2 failed   Albert
  • [gmx-users] compile 2016-beta2 failed   Mark Abraham
    • [gmx-users] compile 2016-beta2 failed   Albert
      • [gmx-users] compile 2016-beta2 failed   Mark Abraham
      • [gmx-users] compile 2016-beta2 failed   Christopher Neale
      • [gmx-users] compile 2016-beta2 failed   Albert
      • [gmx-users] compile 2016-beta2 failed   Mark Abraham
      • [gmx-users] compile 2016-beta2 failed   Albert
      • [gmx-users] compile 2016-beta2 failed   Mark Abraham
      • [gmx-users] compile 2016-beta2 failed   Justin Lemkul
• [gmx-users] (no subject)   Mayank Dixit
• [gmx-users] job failed. Too many CPU?   Albert
  • [gmx-users] job failed. Too many CPU?   Justin Lemkul
• [gmx-users] helixorient, jacobi iteration or junk output...?   Phil Dude
  • [gmx-users] SOLVED: Re: helixorient, jacobi iteration or junk output...?   Phil Dude
    • [gmx-users] SOLVED: Re: helixorient, jacobi iteration or junk output...?   Tsjerk Wassenaar
      • [gmx-users] SOLVED: Re: helixorient, jacobi iteration or junk output...?   Phil Dude
• [gmx-users] MDRUN CRASH 2   Luca Banetta
  • [gmx-users] MDRUN CRASH 2   Justin Lemkul
    • [gmx-users] MDRUN CRASH 2   Luca Banetta
• [gmx-users] query on performance of GTX 1080 in gromacs   jagannath mondal
  • [gmx-users] query on performance of GTX 1080 in gromacs   Szilárd Páll
• [gmx-users] query on performance of GTX 1080 in gromacs   Jagannath Mondal
• [gmx-users] MD Analysis   Amali Guruge
  • [gmx-users] MD Analysis   Sarath Chandra
• [gmx-users] Distance between COM of two groups   Sajjad Kavyani
  • [gmx-users] Distance between COM of two groups   Justin Lemkul
    • [gmx-users] Distance between COM of two groups   Sajjad Kavyani
      • [gmx-users] Distance between COM of two groups   Mark Abraham
      • [gmx-users] Distance between COM of two groups   Sajjad Kavyani
• [gmx-users] parallel job   Alexander Alexander
  • [gmx-users] parallel job   Mark Abraham
    • [gmx-users] parallel job   Alexander Alexander
      • [gmx-users] parallel job   Mark Abraham
      • [gmx-users] parallel job   Szilárd Páll
• [gmx-users] converting the frcmod file and off file to gromacs   OuyangYanhua
  • [gmx-users] converting the frcmod file and off file to gromacs   Mark Abraham
    • [gmx-users] converting the frcmod file and off file to gromacs   Marlon Sidore
      • [gmx-users] converting the frcmod file and off file to gromacs   OuyangYanhua
    • [gmx-users] converting the frcmod file and off file to gromacs   OuyangYanhua
• [gmx-users] Using Glycam forcefield and amber forcefield together   bharat gupta
  • [gmx-users] Using Glycam forcefield and amber forcefield together   Mark Abraham
• [gmx-users] problem with intermolecular restraints   Rebeca García Fandiño
• [gmx-users] two protein   h.mousavi
  • [gmx-users] two protein   Mark Abraham
• [gmx-users] can we constrain a bond?   Albert
  • [gmx-users] can we constrain a bond?   Mark Abraham
• [gmx-users] gmx rdf   amitbehra at chemeng.iisc.ernet.in
  • [gmx-users] gmx rdf   Justin Lemkul
• [gmx-users] Restart to continue a free energy calculations   Alexander Alexander
  • [gmx-users] Restart to continue a free energy calculations   Justin Lemkul
• [gmx-users] Gaussian/GROMACS   张 卓
• [gmx-users] Gromacs 5.1 insert-molecules - Generating bad contacts?   Dan Gil
  • [gmx-users] Gromacs 5.1 insert-molecules - Generating bad contacts?   Justin Lemkul
    • [gmx-users] Gromacs 5.1 insert-molecules - Generating bad contacts?   Dan Gil
• [gmx-users] charmm36 ions fix   gromacs query
  • [gmx-users] charmm36 ions fix   Justin Lemkul
    • [gmx-users] charmm36 ions fix   gromacs query
      • [gmx-users] charmm36 ions fix   Justin Lemkul
      • [gmx-users] charmm36 ions fix   gromacs query
      • [gmx-users] charmm36 ions fix   Justin Lemkul
      • [gmx-users] charmm36 ions fix   gromacs query
      • [gmx-users] charmm36 ions fix   Justin Lemkul
      • [gmx-users] charmm36 ions fix   gromacs query
• [gmx-users] PCA   sun
• [gmx-users] Tutorial 2: KALP-15 in DPPC   Kyle Titus-Glover
• [gmx-users] Tutorial 2: KALP-15 in DPPC   Kyle Titus-Glover
  • [gmx-users] Tutorial 2: KALP-15 in DPPC   Justin Lemkul
    • [gmx-users] Tutorial 2: KALP-15 in DPPC   Kyle Titus-Glover
      • [gmx-users] Tutorial 2: KALP-15 in DPPC   Kyle Titus-Glover
      • [gmx-users] Tutorial 2: KALP-15 in DPPC   Justin Lemkul
      • [gmx-users] Tutorial 2: KALP-15 in DPPC   Kyle Titus-Glover
      • [gmx-users] Tutorial 2: KALP-15 in DPPC   Justin Lemkul
• [gmx-users] Gaussian/GROMACS (? ?)   Groenhof, Gerrit
• [gmx-users] Job Output stops being written during long simulations on HPC cluster   Benjamin Joseph Coscia
  • [gmx-users] Job Output stops being written during long simulations on HPC cluster   Mark Abraham
  • [gmx-users] Job Output stops being written during long simulations on HPC cluster   Szilárd Páll
    • [gmx-users] Job Output stops being written during long simulations on HPC cluster   Mark Abraham
• [gmx-users] Tutorial #3 : Umbrella Sampling (By Justin Lemkul)   amitbehra at chemeng.iisc.ernet.in
  • [gmx-users] Tutorial #3 : Umbrella Sampling (By Justin Lemkul)   Justin Lemkul
• [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   Billy Williams-Noonan
  • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   David van der Spoel
    • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   Billy Williams-Noonan
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   Billy Williams-Noonan
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   David van der Spoel
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   Billy Williams-Noonan
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   Billy Williams-Noonan
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   David van der Spoel
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   Billy Williams-Noonan
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   Qasim Pars
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   David van der Spoel
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   Billy Williams-Noonan
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   David van der Spoel
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   Tsjerk Wassenaar
      • [gmx-users] Insufficient memory (128 GB) for ensemble entropy calculation with gmx covar/gmx anaeig   David van der Spoel
• [gmx-users] gmx convert-tpr   amitbehra at chemeng.iisc.ernet.in
  • [gmx-users] gmx convert-tpr   Justin Lemkul
• [gmx-users] WARNING: Duplicate line found in or between hackblock and rtp entries   Anurag Dobhal
  • [gmx-users] WARNING: Duplicate line found in or between hackblock and rtp entries   Mark Abraham
• [gmx-users] (no subject)   Sepideh Momeninezhad
  • [gmx-users] (no subject)   Marlon Sidore
• [gmx-users] least-squares fitting the second structure on the reference structure   Qasim Pars
  • [gmx-users] least-squares fitting the second structure on the reference structure   Tsjerk Wassenaar
    • [gmx-users] least-squares fitting the second structure on the reference structure   Qasim Pars
      • [gmx-users] least-squares fitting the second structure on the reference structure   Mark Abraham
• [gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding?   Billy Williams-Noonan
  • [gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding?   David van der Spoel
    • [gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding?   Billy Williams-Noonan
      • [gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding?   Billy Williams-Noonan
      • [gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding?   Billy Williams-Noonan
      • [gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding?   David van der Spoel
      • [gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding?   Billy Williams-Noonan
      • [gmx-users] Does gmx covar/gmx anaeig give <dS> or T<dS> for ligand binding?   David van der Spoel
• [gmx-users] Using Gromacs on a cluster   bharat gupta
  • [gmx-users] Using Gromacs on a cluster   Mark Abraham
• [gmx-users] Effect of pressure coupling time constant on equilibrium densities   Miguel Caro
  • [gmx-users] Effect of pressure coupling time constant on equilibrium densities   Mark Abraham
• [gmx-users] Gromacs tutorial similar to Justin Lemkul's   Roshan Shrestha
  • [gmx-users] Gromacs tutorial similar to Justin Lemkul's   Justin Lemkul
• [gmx-users] Gromacs version for polarizable model   Luca Banetta
  • [gmx-users] Gromacs version for polarizable model   Luca Banetta
    • [gmx-users] Gromacs version for polarizable model   Mark Abraham
  • [gmx-users] Gromacs version for polarizable model   Justin Lemkul
• [gmx-users] Block averaging   sun
  • [gmx-users] Block averaging   Justin Lemkul
    • [gmx-users] Block averaging   sun
    • [gmx-users] Block averaging   sun
      • [gmx-users] Block averaging   Justin Lemkul
      • [gmx-users] Block averaging   sun
• [gmx-users] amino acid on solid surface   Alexander Alexander
  • [gmx-users] amino acid on solid surface   Mark Abraham
• [gmx-users] selection of start or end terminus   Alexander Alexander
  • [gmx-users] selection of start or end terminus   Justin Lemkul
    • [gmx-users] selection of start or end terminus   Alexander Alexander
      • [gmx-users] selection of start or end terminus   Justin Lemkul
      • [gmx-users] selection of start or end terminus   Erik Marklund
• [gmx-users] Radial Distribution Function - is there symmetry?   Dan Gil
  • [gmx-users] Radial Distribution Function - is there symmetry?   Mark Abraham
    • [gmx-users] Radial Distribution Function - is there symmetry?   Dan Gil
• [gmx-users] restart error   ingram
  • [gmx-users] restart error   Mark Abraham
    • [gmx-users] restart error   ingram
• [gmx-users] How does gromacs checkpoint works   Husen R
  • [gmx-users] How does gromacs checkpoint works   Mark Abraham
    • [gmx-users] How does gromacs checkpoint works   Husen R
      • [gmx-users] How does gromacs checkpoint works   Mark Abraham
      • [gmx-users] How does gromacs checkpoint works   Husen R
• [gmx-users] GROMOS 54a7 parameters for rare amino acids (eg. beta-alanine)   Billy Williams-Noonan
  • [gmx-users] GROMOS 54a7 parameters for rare amino acids (eg. beta-alanine)   Mark Abraham
    • [gmx-users] GROMOS 54a7 parameters for rare amino acids (eg. beta-alanine)   Billy Williams-Noonan
      • [gmx-users] GROMOS 54a7 parameters for rare amino acids (eg. beta-alanine)   Billy Williams-Noonan
  • [gmx-users] GROMOS 54a7 parameters for rare amino acids (eg. beta-alanine)   Antonio Baptista
• [gmx-users] Relative FEP with restraints   Dries Van Rompaey
• [gmx-users] GROMOS 54a7 parameters for rare amino acids   Groenhof, Gerrit
• [gmx-users] Build time/Build user mismatch, fatal error truncation of file *.xtc failed   Mark Abraham
• [gmx-users] Energy minimization has stopped   Anurag Dobhal
  • [gmx-users] Energy minimization has stopped   Justin Lemkul
    • [gmx-users] Energy minimization has stopped   Justin Lemkul
      • [gmx-users] Energy minimization has stopped   Anurag Dobhal
      • [gmx-users] Energy minimization has stopped   Justin Lemkul
      • [gmx-users] Energy minimization has stopped   Anurag Dobhal
      • [gmx-users] Energy minimization has stopped   Mark Abraham
      • [gmx-users] Energy minimization has stopped   Justin Lemkul
      • [gmx-users] Energy minimization has stopped   Anurag Dobhal
• [gmx-users] How to manage carbohydrate connected to a protein   Stella Maganhi
  • [gmx-users] How to manage carbohydrate connected to a protein   Justin Lemkul
• [gmx-users] Gromacs Orca QMMM segfault   Thilo Mast
  • [gmx-users] Gromacs Orca QMMM segfault   Thilo Mast
    • [gmx-users] Gromacs Orca QMMM segfault   Mark Abraham
• [gmx-users] Saving trajectory with different output time steps   Sanket Ghawali
  • [gmx-users] Saving trajectory with different output time steps   Dries Van Rompaey
• [gmx-users] can we analyse Gromacs trajectory with jupyter?   Albert
  • [gmx-users] can we analyse Gromacs trajectory with jupyter?   Mark Abraham
    • [gmx-users] can we analyse Gromacs trajectory with jupyter?   Hai Nguyen
      • [gmx-users] can we analyse Gromacs trajectory with jupyter?   Albert
      • [gmx-users] can we analyse Gromacs trajectory with jupyter?   Hai Nguyen
• [gmx-users] Gromacs Orca QMMM segfault   Groenhof, Gerrit
• [gmx-users] Parameters file for CHARMM 27 Force Field   Anurag Dobhal
  • [gmx-users] Parameters file for CHARMM 27 Force Field   Justin Lemkul
• [gmx-users] Gromacs 5.1 build for windows 8. Cygwin compatibility with CUDA/GPU acceleration.   timothy.dubbs at louisville.edu
  • [gmx-users] Gromacs 5.1 build for windows 8. Cygwin compatibility with CUDA/GPU acceleration.   Albert
  • [gmx-users] Gromacs 5.1 build for windows 8. Cygwin compatibility with CUDA/GPU acceleration.   Mark Abraham
• [gmx-users] error when continuing the REMD   OuyangYanhua
• [gmx-users] Tesla K80 vs 3 x GTX 980ti   Nikhil Maroli
  • [gmx-users] Tesla K80 vs 3 x GTX 980ti   Yahya S
• [gmx-users] pressure and density   Alexander Alexander
  • [gmx-users] pressure and density   Mark Abraham
    • [gmx-users] pressure and density   Alexander Alexander
      • [gmx-users] pressure and density   Alexander Alexander
• [gmx-users] unusual behavior of CV in steered MD (gromacs+plumed)   tarak karmakar
• [gmx-users] wrap only in XZ?   Albert
  • [gmx-users] wrap only in XZ?   Tsjerk Wassenaar
    • [gmx-users] wrap only in XZ?   Albert
• [gmx-users] Segmentation Fault - Water on Substrate   Diez Fernandez, Amanda
  • [gmx-users] Segmentation Fault - Water on Substrate   Mark Abraham
• [gmx-users] Segmentation Fault - Water on Substrate   Diez Fernandez, Amanda
• [gmx-users] Mn/Mn2+ Parameters included in Amberff   Vito Spadavecchio
  • [gmx-users] Mn/Mn2+ Parameters included in Amberff   Justin Lemkul
• [gmx-users] Running all the processors in HPC   Santhosh Kumar Nagarajan
  • [gmx-users] Running all the processors in HPC   Smith, Micholas D.
• [gmx-users] Performance loss during pulling simulation   Jan Meyer
  • [gmx-users] Performance loss during pulling simulation   Mark Abraham
• [gmx-users] PCA and gmx analyze   Sun Iba
  • [gmx-users] PCA and gmx analyze   Tsjerk Wassenaar
    • [gmx-users] PCA and gmx analyze   sun
• [gmx-users] GPU acceleration   יוכבד
  • [gmx-users] GPU acceleration   Justin Lemkul
    • [gmx-users] GPU acceleration   יוכבד
      • [gmx-users] GPU acceleration   Justin Lemkul
      • [gmx-users] GPU acceleration   יוכבד
      • [gmx-users] GPU acceleration   Justin Lemkul
• [gmx-users] SEGMENTATION FAULT (Core dumped)   Luca Banetta
  • [gmx-users] SEGMENTATION FAULT (Core dumped)   Justin Lemkul
    • [gmx-users] SEGMENTATION FAULT (Core dumped)   Luca Banetta
  • [gmx-users] SEGMENTATION FAULT (Core dumped)   Luca Banetta
    • [gmx-users] SEGMENTATION FAULT (Core dumped)   Justin Lemkul
• [gmx-users] Tesla K80 vs GeForce GTX 980-repost   Nikhil Maroli
  • [gmx-users] Tesla K80 vs GeForce GTX 980-repost   Szilárd Páll
    • [gmx-users] Tesla K80 vs GeForce GTX 980-repost   Nikhil Maroli
      • [gmx-users] Tesla K80 vs GeForce GTX 980-repost   Mark Abraham
      • [gmx-users] Tesla K80 vs GeForce GTX 980-repost   Nikhil Maroli
      • [gmx-users] Tesla K80 vs GeForce GTX 980-repost   Mark Abraham
• [gmx-users] Gromacs 5.1 benchmarks   Kevin Chen
• [gmx-users] Errors on running simulation in Cluster   dammar badu
• [gmx-users] TRR file in VMD   amitbehra at chemeng.iisc.ernet.in
  • [gmx-users] TRR file in VMD   Sarath Chandra
• [gmx-users] Number of H bonds formed between ligand and amino acid residues   Amali Guruge
  • [gmx-users] Number of H bonds formed between ligand and amino acid residues   Subhomoi Borkotoky
    • [gmx-users] Number of H bonds formed between ligand and amino acid residues   Amali Guruge
      • [gmx-users] Number of H bonds formed between ligand and amino acid residues   Erik Marklund
• [gmx-users] charge of aminoacids in an special pH   Atila Petrosian
  • [gmx-users] charge of aminoacids in an special pH   Marlon Sidore
    • [gmx-users] charge of aminoacids in an special pH   Erik Marklund
• [gmx-users] Extension of simulations   Seera Suryanarayana
  • [gmx-users] Extension of simulations   Mark Abraham
• [gmx-users] (no subject)   Sepideh Momeninezhad
  • [gmx-users] (no subject)   Mark Abraham
    • [gmx-users] (no subject)   Mark Abraham
• [gmx-users] hbond between backbone atoms   Ming Tang
  • [gmx-users] hbond between backbone atoms   Justin Lemkul
• [gmx-users] (no subject)   Sepideh Momeninezhad
  • [gmx-users] (no subject)   Mark Abraham
• [gmx-users] Problems when running gromacs   Faust SHI
  • [gmx-users] Problems when running gromacs   Mark Abraham
• [gmx-users] gromacs command in mpi single precision   Alexander Alexander
  • [gmx-users] gromacs command in mpi single precision   Mark Abraham
    • [gmx-users] gromacs command in mpi single precision   Peter Kroon
• [gmx-users] charge assign acetaminophen   elham tazikeh
  • [gmx-users] charge assign acetaminophen   Justin Lemkul
• [gmx-users] a problem for installing gromacs-5.1.2   15110700076 at fudan.edu.cn
  • [gmx-users] a problem for installing gromacs-5.1.2   Mark Abraham
• [gmx-users] How to ignore hydrogen of one part of a pdb file by pdb2gmx   柯谱
  • [gmx-users] How to ignore hydrogen of one part of a pdb file by pdb2gmx   Justin Lemkul
    • [gmx-users] How to ignore hydrogen of one part of a pdb file by pdb2gmx   Mark Abraham
• [gmx-users] Information about different analysis tools in Gromacs   anu chandra
  • [gmx-users] Information about different analysis tools in Gromacs   Justin Lemkul
• [gmx-users] Wrote pdb files with previous and current coordinates step 0Segmentation fault   Atila Petrosian
• [gmx-users] Binding Energy   Sanket Ghawali
  • [gmx-users] Binding Energy   Billy Williams-Noonan
• [gmx-users] Diffusion constant   pari lotfi
  • [gmx-users] Diffusion constant   Mark Abraham
• [gmx-users] Water molecule can not be settled   zeineb SI CHAIB
  • [gmx-users] Water molecule can not be settled   Mark Abraham
    • [gmx-users] Water molecule can not be settled   Billy Williams-Noonan
• [gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 157   pari lotfi
• [gmx-users] md.mdp for CHARMM36   Sajad Ahrari
• [gmx-users] Water molecule can not be settled   zeineb SI CHAIB
  • [gmx-users] Water molecule can not be settled   Mark Abraham
• [gmx-users] Treatment of HIE, HID, HIP with the Amber force field   Julian
  • [gmx-users] Treatment of HIE, HID, HIP with the Amber force field   Mark Abraham
• [gmx-users] REMD - replicas sampling in temperatures beyond the assigned range   NISHA Prakash
  • [gmx-users] REMD - replicas sampling in temperatures beyond the assigned range   Justin Lemkul
    • [gmx-users] REMD - replicas sampling in temperatures beyond the assigned range   NISHA Prakash
      • [gmx-users] REMD - replicas sampling in temperatures beyond the assigned range   Justin Lemkul
      • [gmx-users] REMD - replicas sampling in temperatures beyond the assigned range   NISHA Prakash
      • [gmx-users] REMD - replicas sampling in temperatures beyond the assigned range   Mark Abraham
• [gmx-users] rmsdist   Sanja Zivanovic
  • [gmx-users] rmsdist   Justin Lemkul
• [gmx-users] Water molecule can not be settled   zeineb SI CHAIB
  • [gmx-users] Water molecule can not be settled   Mark Abraham

Last message date: Thu Jun 30 18:22:47 CEST 2016
Archived on: Thu Jun 30 18:22:48 CEST 2016

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