[gmx-users] Cross correlation map of residues

Qasim Pars qasimpars at gmail.com
Fri Jun 3 01:50:59 CEST 2016


Dear gmx users,

I need to get the cross correlation map of all residues belonging to a
protein (like this figure
http://thegrantlab.org/bio3d/vignettes/Bio3D_nma/figures/ex1C-dccmplot.png).
Is there any tool to get such a plot with GROMACS?

By the way, gmx covar -xpma gives the cross correlation for each atom pair
but it is not what I want.

Any suggestions will be appreciated.

-- 
Qasim Pars


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