[gmx-users] DPPC-DOTAP Mixed Lipid Bilayer

[Tsjerk Wassenaar]

Hi Nidhin,

Insane allows you to build lipids from the command line. Alternatively,
it's pretty easy to add DOTAP to insane, using the templates inside. If you
feel you need a hand with that, let me know.

Cheers,

Tsjerk
On Jun 7, 2016 12:21 AM, "Nidhin Thomas" <nidhin.thomas0624 at gmail.com>
wrote:

> Hi GROMACS Users,
>
> I would like to create a mixed bilayer of DPPC and DOTAP lipids for
> research. I usually use charm-gui or insane.py to create a mixed bilayer.
> But I could not find DOTAP listed in either of these lists. When I searched
> online, I got a mixed bilayer system for DMPC & DPPC lipids and the
> parameter file for DOTAP lipid from
> http://www.softsimu.net/downloads.shtml.
>
> My objective is to create mixed lipid bilayer system with various
> percentage of DOTAP lipids. In addition, I have to create a bilayer with
> one DOTAP in each layer and remaining DPPC lipids. Can anyone please guide
> me to create these lipid bilayers? It would be great if someone could
> explain, how to create these mixed bilayers from scratch.
>
> Thanks a lot everyone!,
>
> Nidhin Thomas
> University of Houston
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