[gmx-users] An extra charge
Alexander Alexander
alexanderwien2k at gmail.com
Sat Jun 11 19:11:11 CEST 2016
Dear gromacs user,
I am expecting to get a uncharged GRO file of the Glutamic acid by invoking
below command, and selecting the protonated version of it, but I do not
know why I get unexpected total charge of "-0.110 e" at the end when I use
the OPLS-AA force field while the other FF's result to the expected
uncharged one?
~> gmx pdb2gmx -f glu.pdb -o glu.gro -water tip3p -ignh -ter -glu
OPLS-AA
Protonated (charge 0) (GLUH)
Total charge -0.110 e
Any comment, please?
Regards,
Alex
More information about the gromacs.org_gmx-users
mailing list