[gmx-users] Average exchange probability when extending REMD

OuyangYanhua 15901283893 at 163.com
Wed Jun 15 15:47:26 CEST 2016


Sorry, I am a little confused, what you mean is that the gromacs cannot automatically combine the data of the both  in the replica exchange statistics section. Maybe myself need write some program to combine the first part data and the extended data to get the average probability  of whole REMD?
> 在 2016年6月15日,下午9:34,Mark Abraham <mark.j.abraham at gmail.com> 写道:
> 
> Hi,
> 
> That's never been implemented, unfortunately.
> 
> Mark
> 
> On Wed, Jun 15, 2016 at 3:25 PM OuyangYanhua <15901283893 at 163.com> wrote:
> 
>> Hi,
>> I extended the REMD of a protein in a explicit water and append the data
>> to the old ones and it appended. However, at the end of the .log files, the
>> replica exchange statistics section only contains the data of  extended
>> time, it  did not combine  the former statistics and the extended
>> statistics. why? and how to combine the both statistics.
>> 
>> Best regards,
>> Ouyang
>> --
>> Gromacs Users mailing list
>> 
>> * Please search the archive at
>> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
>> posting!
>> 
>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>> 
>> * For (un)subscribe requests visit
>> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
>> send a mail to gmx-users-request at gromacs.org.
>> 
> -- 
> Gromacs Users mailing list
> 
> * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
> 
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> 
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.




More information about the gromacs.org_gmx-users mailing list