[gmx-users] compile 2016-beta2 failed

[Mark Abraham]

Hi,

My earlier comments all stand - you need a working cuda compilation
environment, and the people to help you do that are the people who
installed it :-)

Mark

On Fri, Jun 17, 2016 at 9:52 PM Albert <mailmd2011 at gmail.com> wrote:

> Thanks a lot for such comments.
>
> I specified the path of cicc in my .bashrc as the following:
>
> export PATH=/opt/common/cuda-7.5/nvvm/bin:$PATH
>
> Then compiled it again
>
> cmake .. -DCMAKE_INSTALL_PREFIX=/home/albert/install/gromacs/2016-beta2
> -DGMX_GPU=ON -DGMX_MPI=ON -DCUDA_TOOLKIT_ROOT_DIR=/opt/common/cuda-7.5
>
> make -j32
>
> but it still failed:
>
>
> [  1%] Built target view_objlib
> [  1%] Built target mdrun_objlib
> error in open: error in open: error in open: error in open:
>
> /opt/common/cuda-7.5/bin/../nvvm/libdevice/libdevice.compute_20.10.bc/opt/common/cuda-7.5/bin/../nvvm/libdevice/libdevice.compute_20.10.bc
> /opt/common/cuda-7.5/bin/../nvvm/libdevice/libdevice.compute_20.10.bc
> /opt/common/cuda-7.5/bin/../nvvm/libdevice/libdevice.compute_20.10.bc
>
> No such file or directoryNo such file or directoryNo such file or directory
> ake[2]: ***
>
> [src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/./libgromacs_generated_cudautils.cu.o]
> Error 1
> make[2]: ***
>
> [src/gromacs/CMakeFiles/libgromacs.dir/utility/./libgromacs_generated_cuda_version_information.cu.o]
> Error 1
> CMake Error at libgromacs_generated_pmalloc_cuda.cu.o.cmake:260 (message):
>    Error generating file
>
> /home/albert/Downloads/gromacs-2016-beta2/build/src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/./libgromacs_generated_pmalloc_cuda.cu.o
>
>
> make[2]: ***
>
> [src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/./libgromacs_generated_pmalloc_cuda.cu.o]
> Error 1
> error in open:
> /opt/common/cuda-7.5/bin/../nvvm/libdevice/libdevice.compute_20.10.bc
> No such file or directory
> CMake Error at libgromacs_generated_nbnxn_cuda.cu.o.cmake:260 (message):
>    Error generating file
>
> /home/albert/Downloads/gromacs-2016-beta2/build/src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_cuda/./libgromacs_generated_nbnxn_cuda.cu.o
>
>
> make[2]: ***
>
> [src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_cuda/./libgromacs_generated_nbnxn_cuda.cu.o]
> Error 1
> make[1]: *** [src/gromacs/CMakeFiles/libgromacs.dir/all] Error 2
> make: *** [all] Error 2
>
>
>
>
>
> On 06/17/2016 09:31 PM, Christopher Neale wrote:
> > cicc is a cuda compiler (i.e., nvcc)
>
> --
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