[gmx-users] converting the frcmod file and off file to gromacs

[OuyangYanhua]

Hi,
I am simulating a protein phosphorylated on Ser and Thr residues using AMBER99SB-ILDN ff with Gromacs 5.0. I read the paper that I can use the phophorylation parameters in the http://sites.pharmacy.manchester.ac.uk/bryce/amber <http://sites.pharmacy.manchester.ac.uk/bryce/amber> . However it is difficult for me to read the parameters and statistics in the frcmod and off files. So I have trouble in converting the statistics in framod files and off file to gromacs files, such as .rtp, ffbond.itp.

Best regards,
Ouyang