[gmx-users] Gromacs 5.1 insert-molecules - Generating bad contacts?

[Dan Gil]

Hi Mark,

I thought about your said, and tried to manage the VDW radi of atoms with
the "-radius" option.
I believe it scales the known VDW radi values by the number specified by
me. So I try:
"gmx insert-molecules ... ... -radius 1.2"

 The result is still the same, I get segmentation errors because rms goes
to nan. I try again with "-radius 1.5" and I am still getting lucky.

Also, excuse me for creating a new question again. I was subscribed to
receive batch emails from the users-list, and I did not know how to respond
questions in that mode.

Thanks,

Dan