[gmx-users] a problem for installing gromacs-5.1.2

[Mark Abraham]

Hi,

This is normal. See
http://manual.gromacs.org/documentation/5.1/ReleaseNotes/removed-features.html#removed-temporary-symlinks-from-pre-5-0-tool-names

Mark

On Wed, Jun 29, 2016 at 10:21 AM <15110700076 at fudan.edu.cn> wrote:

> hello everyone,
>       I just tried to install gromacs-5.1.2 with GPU supports. After
> finishing the installation, I found that there is no executables in the bin
> folder except gmx,demux.pl and several shell scripts. My installing
> commands are following:
>
>
>
>
> cd gromacs-5.1.2
> mkdir build
> cd build
> cmake ../ -DGMX_BUILD_OWN_FFTW=ON -DGMX_GPU=ON
> -DCMAKE_INSTALL_PREFIX=/home/liuqing/Documents/gromacs512
> -DCUDA_TOOLKIT_ROOT_DIR=/usr/local/cuda
> -DCUDA_HOST_COMPILER=/usr/local/cuda/bin -DREGRESSIONTEST_DOWNLOAD=ON
> make
> make check
> sudo make install
> other notes: because cuda-7.5 does not support gcc-5.1, I installed
> gcc-4.9.0 in my home directory and then "make" command can go through. the
> cuda-7.5 is installed by yum just.
>
>
>
> --
>
>
> Best wishes,
>
> ------------------------------------------------------------
>
> Qing Liu
>
> Fudan Univ.
>
> E-mail: 15110700076 at fudan.edu.cn
> --
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