[gmx-users] Water molecule can not be settled

[zeineb SI CHAIB]

Dear Mark, 

Thank you very much for your answer. 

I'm trying to minimize my protein in vacuo but I'm havig problem to undrstand the concept of "in vacuo" so I'm enable to construct an mdp file and I can't found valid examples in forums and internet. Could you help me with that please?

Also, the "time step of the minimisation is 'emstep', is it correct? 

Thank you very much for your help. 

Zeineb.