[gmx-users] Insertion of Ion-channels onto the membrane using g_membed with Amber force field

[Mark Abraham]

Hi,

What's the question? :-) Sounds like maybe you need to be more gentle when
using all-atom Amber models than GROMOS ones that may not be?

Mark

On Wed, Dec 6, 2017, 5:30 PM Dhaniram Mahato <bioinfojsr at gmail.com> wrote:

> Hi there,
>
> g_membed is not able to fix the clashes while using the Amber force field,
> but when I use the gromos force field , it can fix the clashes and also It
> can insert the big protein onto the membrane perfectly.
>
> Thanks
> Ram
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>