[gmx-users] Insertion of Ion-channels onto the membrane using g_membed with Amber force field

Mark Abraham mark.j.abraham at gmail.com
Wed Dec 6 07:50:38 CET 2017


What's the question? :-) Sounds like maybe you need to be more gentle when
using all-atom Amber models than GROMOS ones that may not be?


On Wed, Dec 6, 2017, 5:30 PM Dhaniram Mahato <bioinfojsr at gmail.com> wrote:

> Hi there,
> g_membed is not able to fix the clashes while using the Amber force field,
> but when I use the gromos force field , it can fix the clashes and also It
> can insert the big protein onto the membrane perfectly.
> Thanks
> Ram
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