[gmx-users] Insertion of Ion-channels onto the membrane using g_membed with Amber force field

[Dhaniram Mahato]

Thanks for the reply.

For all-atom Amber ff, Should I change the neighbor list value or change in
the cut-off for VdW interactions. As the side-chain hydrogen atoms might be
clashing with the lipid atoms and thus producing many LINCS warning.

Thanks
Ram