[gmx-users] Insertion of Ion-channels onto the membrane using g_membed with Amber force field

Dhaniram Mahato bioinfojsr at gmail.com
Wed Dec 6 08:12:35 CET 2017

Thanks for the reply.

For all-atom Amber ff, Should I change the neighbor list value or change in
the cut-off for VdW interactions. As the side-chain hydrogen atoms might be
clashing with the lipid atoms and thus producing many LINCS warning.


More information about the gromacs.org_gmx-users mailing list