[gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein
drrahulsuresh at gmail.com
Wed Dec 13 17:26:46 CET 2017
I am not sure if you can do that for the entire trajectory but for a pdb
structure at particular ns you can calculate the hydrophobicity of
particular part of protein using Discovery studio.(You have to adopt some
On Wed, Dec 13, 2017 at 9:52 PM, Sudip Das <das.sudip37 at gmail.com> wrote:
> Dear All,
> Is there any tool available that can calculate hydrophobic and hydrophilic
> (solvent accessible) surface areas *for a particular portion (not the
> whole)* of a protein?
> Thanks in advance!
> Best wishes,
> Sudip Das
> PhD Student
> C/o. Prof. S. Balasubramanian
> Molecular Simulations Lab
> Chemistry and Physics of Materials Unit (CPMU)
> Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR)
> Bangalore, India
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