[gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein

[Sudip Das]

Dear Rahul,

Thanks for your reply!

Best wishes,
Sudip



‌

Sudip Das

PhD Student
C/o. Prof. S. Balasubramanian
Molecular Simulations Lab
Chemistry and Physics of Materials Unit (CPMU)
Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR)
Bangalore, India

On Wed, Dec 13, 2017 at 9:56 PM, RAHUL SURESH <drrahulsuresh at gmail.com>
wrote:

> Hi Sudip
>
> I am not sure if you can do that for the entire trajectory but for a pdb
> structure at particular ns you can calculate the hydrophobicity of
> particular part of protein using Discovery studio.(You have to adopt some
> backbench tricks)
>
> Thank you
>
> On Wed, Dec 13, 2017 at 9:52 PM, Sudip Das <das.sudip37 at gmail.com> wrote:
>
> > Dear All,
> >
> > Is there any tool available that can calculate hydrophobic and
> hydrophilic
> > (solvent accessible) surface areas *for a particular portion (not the
> > whole)* of a protein?
> >
> > Thanks in advance!
> >
> > Best wishes,
> >
> > Sudip Das
> >
> > PhD Student
> > C/o. Prof. S. Balasubramanian
> > Molecular Simulations Lab
> > Chemistry and Physics of Materials Unit (CPMU)
> > Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR)
> > Bangalore, India
> >
> >
> >
> > ‌
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> --
> *Regards,*
> *Rahul Suresh*
> *Research Scholar*
> *Bharathiar University*
> *Coimbatore*
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