[gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein

[Justin Lemkul]

On 12/13/17 11:22 AM, Sudip Das wrote:
> Dear All,
>
> Is there any tool available that can calculate hydrophobic and hydrophilic
> (solvent accessible) surface areas *for a particular portion (not the
> whole)* of a protein?

Yes, you can get that from gmx sasa. Generate a surface for the whole 
protein, and choose whatever subset of that surface that you want as the 
output.

-Justin

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Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

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