[gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein
jalemkul at vt.edu
Wed Dec 13 17:42:56 CET 2017
On 12/13/17 11:22 AM, Sudip Das wrote:
> Dear All,
> Is there any tool available that can calculate hydrophobic and hydrophilic
> (solvent accessible) surface areas *for a particular portion (not the
> whole)* of a protein?
Yes, you can get that from gmx sasa. Generate a surface for the whole
protein, and choose whatever subset of that surface that you want as the
Justin A. Lemkul, Ph.D.
Virginia Tech Department of Biochemistry
303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061
jalemkul at vt.edu | (540) 231-3129
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