[gmx-users] Hydrophobic and hydrophilic SASA for a particular portion of a protein

Justin Lemkul jalemkul at vt.edu
Wed Dec 13 17:42:56 CET 2017

On 12/13/17 11:22 AM, Sudip Das wrote:
> Dear All,
> Is there any tool available that can calculate hydrophobic and hydrophilic
> (solvent accessible) surface areas *for a particular portion (not the
> whole)* of a protein?

Yes, you can get that from gmx sasa. Generate a surface for the whole 
protein, and choose whatever subset of that surface that you want as the 



Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061

jalemkul at vt.edu | (540) 231-3129


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