[gmx-users] membrane proteins simulation

[Negar Parvizi]

Dear all users,



I am new in membrane proteins simulation. I want to simulate a membrane protein that it is a part of a large protein and has a big extracellular part.Here is my question: is it ok, I just simulate the membrane part even it is a part of a large protein? and if the answer is yes, what is the best expiation for it ?
Thanks in advance,N.Parvizi