March 2017 Archives by thread

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Starting: Wed Mar 1 06:26:39 CET 2017
Ending: Fri Mar 31 19:11:15 CEST 2017
Messages: 808

• [gmx-users] HOW TO SPLIT RESIDUES   Subashini .K
  • [gmx-users] HOW TO SPLIT RESIDUES   Justin Lemkul
• [gmx-users] Cohesive Energy Density (CED) Calculation in Gromacs simulations   ZUO Taisen
  • [gmx-users] Cohesive Energy Density (CED) Calculation in Gromacs simulations   David van der Spoel
• [gmx-users] segmentation fault in gmx hbond   Dr. D. H. Dagade
  • [gmx-users] segmentation fault in gmx hbond   Tasneem Kausar
  • [gmx-users] segmentation fault in gmx hbond   David van der Spoel
• [gmx-users] PDB2GMX Fatal Error   Syed Azeem
  • [gmx-users] PDB2GMX Fatal Error   Reza Esmaeili
• [gmx-users] Charmm topologies for DHF/NADPH   Nicolas Cheron
  • [gmx-users] Charmm topologies for DHF/NADPH   Justin Lemkul
• [gmx-users] PDB2GMX Fatal Error   Syed Azeem
  • [gmx-users] PDB2GMX Fatal Error   Justin Lemkul
• [gmx-users] Simulation crashes: issue with [pair] potential   poma at ifpan.edu.pl
  • [gmx-users] Simulation crashes: issue with [pair] potential   Mark Abraham
    • [gmx-users] Simulation crashes: issue with [pair] potential   poma at ifpan.edu.pl
• [gmx-users] Question regarding coarse-graining martini   Peter Kroon
• [gmx-users] segmentation fault in gmx hbond   Dr. D. H. Dagade
  • [gmx-users] segmentation fault in gmx hbond   Justin Lemkul
• [gmx-users] pdb2gmx throws a fatal error for Carbon Monoxide   Acqualine Lobo
  • [gmx-users] pdb2gmx throws a fatal error for Carbon Monoxide   Justin Lemkul
    • [gmx-users] pdb2gmx throws a fatal error for Carbon Monoxide   Acqualine Lobo
      • [gmx-users] pdb2gmx throws a fatal error for Carbon Monoxide   Justin Lemkul
      • [gmx-users] pdb2gmx throws a fatal error for Carbon Monoxide   Acqualine Lobo
• [gmx-users] PDB2GMX Fatal Error   Syed Azeem
• [gmx-users] Velocity as a function of distance Z (Mark Abraham)   Kamps, M.
  • [gmx-users] Velocity as a function of distance Z (Mark Abraham)   Mark Abraham
• [gmx-users] Per lipid area for heterogeneous membrane   Мижээ Батсайхан
  • [gmx-users] Per lipid area for heterogeneous membrane   Justin Lemkul
• [gmx-users] The spacing of the decimal points in file is not consistent   Karchevskaya, Anastasia
  • [gmx-users] The spacing of the decimal points in file is not consistent   Justin Lemkul
• [gmx-users] topology   RAHUL SURESH
  • [gmx-users] topology   Justin Lemkul
    • [gmx-users] topology   RAHUL SURESH
      • [gmx-users] topology   Subashini .K
      • [gmx-users] topology   Justin Lemkul
      • [gmx-users] topology   RAHUL SURESH
      • [gmx-users] topology   RAHUL SURESH
      • [gmx-users] topology   Justin Lemkul
      • [gmx-users] topology   Justin Lemkul
      • [gmx-users] topology   Justin Lemkul
      • [gmx-users] topology   Jakub Krajniak
      • [gmx-users] topology   RAHUL SURESH
      • [gmx-users] topology   RAHUL SURESH
• [gmx-users] Per lipid area for heterogeneous membrane   Мижээ Батсайхан
  • [gmx-users] Per lipid area for heterogeneous membrane   shweta singh
    • [gmx-users] Per lipid area for heterogeneous membrane   Justin Lemkul
  • [gmx-users] Per lipid area for heterogeneous membrane   Justin Lemkul
• [gmx-users] Free energy calculations   Amir Zeb
  • [gmx-users] Free energy calculations   Mark Abraham
• [gmx-users] Gromac4.6.7 installation problem   Mohsen Ramezanpour
  • [gmx-users] Gromac4.6.7 installation problem   Mark Abraham
    • [gmx-users] Gromac4.6.7 installation problem   Mohsen Ramezanpour
      • [gmx-users] Gromac4.6.7 installation problem   Mark Abraham
      • [gmx-users] Gromac4.6.7 installation problem   Mark Abraham
• [gmx-users] segmentation fault in gmx hbond   Dr. D. H. Dagade
• [gmx-users] Gromacs with Plumed   Åke Sandgren
  • [gmx-users] Gromacs with Plumed   Giovanni Bussi
  • [gmx-users] Gromacs with Plumed   Szilárd Páll
    • [gmx-users] Gromacs with Plumed   Giovanni Bussi
      • [gmx-users] Gromacs with Plumed   Szilárd Páll
      • [gmx-users] Gromacs with Plumed   Szilárd Páll
• [gmx-users] Per lipid area for heterogeneous membrane   Björn Sommer
• [gmx-users] Fatal error: Atomtype CA not found   Puneet
  • [gmx-users] Fatal error: Atomtype CA not found   Justin Lemkul
• [gmx-users] MM/Pbsa   Kingsley Theras Primus Dass .
  • [gmx-users] MM/Pbsa   Mark Abraham
• [gmx-users] Catenation and sampling   suniba shuaib
  • [gmx-users] Catenation and sampling   Justin Lemkul
  • [gmx-users] Catenation and sampling   Mark Abraham
• [gmx-users] Updating/upgrading GROMACS   Gregory Poon
  • [gmx-users] Updating/upgrading GROMACS   Szilárd Páll
    • [gmx-users] Updating/upgrading GROMACS   Gregory Poon
• [gmx-users] 1-4 VDW and 1-4 EEL Energy Components in mm-gbsa   Atila Petrosian
• [gmx-users] Invalid Order for Directive Defaults Error Due to Force Field Mixing   Sanim Rahman
  • [gmx-users] Invalid Order for Directive Defaults Error Due to Force Field Mixing   Justin Lemkul
    • [gmx-users] Invalid Order for Directive Defaults Error Due to Force Field Mixing   Amir Zeb
      • [gmx-users] Invalid Order for Directive Defaults Error Due to Force Field Mixing   Justin Lemkul
      • [gmx-users] Invalid Order for Directive Defaults Error Due to Force Field Mixing   Amir Zeb
• [gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff?   Jonathan Saboury
  • [gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff?   Justin Lemkul
    • [gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff?   Jonathan Saboury
      • [gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff?   Justin Lemkul
      • [gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff?   Jonathan Saboury
      • [gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff?   Mark Abraham
      • [gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff?   Justin Lemkul
      • [gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff?   Jonathan Saboury
      • [gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff?   Justin Lemkul
      • [gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff?   Jonathan Saboury
• [gmx-users] Distance between centers of mass   ÁLVARO RODRIGO RUIZ FERNÁNDEZ
  • [gmx-users] Distance between centers of mass   Justin Lemkul
    • [gmx-users] Distance between centers of mass   CROUZY Serge 119222
      • [gmx-users] Distance between centers of mass   Justin Lemkul
• [gmx-users] linking error while trying to build gromacs   Andrey Tolstov
  • [gmx-users] linking error while trying to build gromacs   Mark Abraham
    • [gmx-users] linking error while trying to build gromacs   Толстов Андрей
      • [gmx-users] linking error while trying to build gromacs   Mark Abraham
      • [gmx-users] linking error while trying to build gromacs   Толстов Андрей
• [gmx-users] Per lipid area for heterogeneous membrane   Мижээ Батсайхан
• [gmx-users] Per lipid area for heterogeneous membrane   Мижээ Батсайхан
  • [gmx-users] Per lipid area for heterogeneous membrane   Justin Lemkul
• [gmx-users] force application group wise   Mark Abraham
  • [gmx-users] force application group wise   Rana Ali
    • [gmx-users] force application group wise   Mark Abraham
• [gmx-users] gromacs.org_gmx-users Digest, Vol 155, Issue 21   Kamps, M.
• [gmx-users] Velocity as a function of distance Z   Kamps, M.
  • [gmx-users] Velocity as a function of distance Z   Mark Abraham
• [gmx-users] Analyzing Desmond trajectories using GROMACS tools   zeineb SI CHAIB
  • [gmx-users] Analyzing Desmond trajectories using GROMACS tools   Justin Lemkul
  • [gmx-users] Analyzing Desmond trajectories using GROMACS tools   zeineb SI CHAIB
    • [gmx-users] Analyzing Desmond trajectories using GROMACS tools   Justin Lemkul
    • [gmx-users] Analyzing Desmond trajectories using GROMACS tools   zeineb SI CHAIB
      • [gmx-users] Analyzing Desmond trajectories using GROMACS tools   David van der Spoel
• [gmx-users] Dihedral PCA documentation   Matthias Ernst
• [gmx-users] rdf calculation with respect to center of mass   Maryam Khalkhali
• [gmx-users] UMBRELLA SAMPLING   Subashini .K
  • [gmx-users] UMBRELLA SAMPLING   Justin Lemkul
• [gmx-users] RDF calculation   Farrokh Yousefi
  • [gmx-users] fatal error   Urszula Uciechowska
    • [gmx-users] fatal error   Mark Abraham
      • [gmx-users] fatal error   Urszula Uciechowska
      • [gmx-users] fatal error   Justin Lemkul
      • [gmx-users] fatal error   Mark Abraham
• [gmx-users] NPT equilibration without pbc   Rajorshi Paul
  • [gmx-users] NPT equilibration without pbc   Alex
    • [gmx-users] NPT equilibration without pbc   Rajorshi Paul
      • [gmx-users] NPT equilibration without pbc   Alex
      • [gmx-users] NPT equilibration without pbc   Rajorshi Paul
      • [gmx-users] NPT equilibration without pbc   Alex
      • [gmx-users] NPT equilibration without pbc   Rajorshi Paul
      • [gmx-users] NPT equilibration without pbc   Mark Abraham
• [gmx-users] membrane proteins simulation   Negar Parvizi
  • [gmx-users] membrane proteins simulation   Justin Lemkul
• [gmx-users] 100-quartz force field for GROMACS using CGenFF   Ivan Gladich
  • [gmx-users] 100-quartz force field for GROMACS using CGenFF   Justin Lemkul
    • [gmx-users] 100-quartz force field for GROMACS using CGenFF   Ivan Gladich
• [gmx-users] To invoke GPU in gromacs version 4.6.4   vinshal shalini
  • [gmx-users] To invoke GPU in gromacs version 4.6.4   Alex
    • [gmx-users] To invoke GPU in gromacs version 4.6.4   Mark Abraham
• [gmx-users] Meaning of columns in .xvg output file   Kamps, M.
  • [gmx-users] Meaning of columns in .xvg output file   Justin Lemkul
• [gmx-users] running MD on gpu (Fatal error)   Andrew Bostick
  • [gmx-users] running MD on gpu (Fatal error)   Mark Abraham
• [gmx-users] Your confirmation is required to join the gromacs.org_gmx-users mailing list   MRINAL ARANDHARA
• [gmx-users] domain decomposition Error   MRINAL ARANDHARA
  • [gmx-users] domain decomposition Error   shweta singh
    • [gmx-users] domain decomposition Error   Mark Abraham
      • [gmx-users] domain decomposition Error   MRINAL ARANDHARA
      • [gmx-users] domain decomposition Error   Mark Abraham
      • [gmx-users] domain decomposition Error   MRINAL ARANDHARA
      • [gmx-users] domain decomposition Error   Mark Abraham
• [gmx-users] Domain Decomposition Error   MRINAL ARANDHARA
• [gmx-users] unusual GridMAT-MD tool result using gnuplot   Мижээ Батсайхан
  • [gmx-users] unusual GridMAT-MD tool result using gnuplot   Justin Lemkul
  • [gmx-users] Fwd: unusual GridMAT-MD tool result using gnuplot   Мижээ Батсайхан
• [gmx-users] NPT equillabration Error bilayer   MRINAL ARANDHARA
• [gmx-users] Meaning of columns in .xvg output file   Kamps, M.
  • [gmx-users] Meaning of columns in .xvg output file   Mark Abraham
    • [gmx-users] Meaning of columns in .xvg output file   Mark Abraham
• [gmx-users] per residue RMSF calculation - reg   Vigneshwar Ramakrishnan
• [gmx-users] Steepest Descents converged to machine precision in XX steps   Nikhil Maroli
  • [gmx-users] Steepest Descents converged to machine precision in XX steps   Justin Lemkul
• [gmx-users] Steepest Descents converged to machine precision in XX steps   Nikhil Maroli
  • [gmx-users] Steepest Descents converged to machine precision in XX steps   Justin Lemkul
    • [gmx-users] Steepest Descents converged to machine precision in XX steps   Felipe Merino
• [gmx-users] User defined potentials with implicit solvent   John Stoppelman
  • [gmx-users] User defined potentials with implicit solvent   Justin Lemkul
• [gmx-users] Question regarding rebuilding the simulation box   ali.khourshaei71 at student.sharif.edu
  • [gmx-users] Question regarding rebuilding the simulation box   Mark Abraham
• [gmx-users] Question regarding rebuilding the simulation box   ali.khourshaei71 at student.sharif.edu
  • [gmx-users] Question regarding rebuilding the simulation box   Mark Abraham
• [gmx-users] Get a correct .pdb for a synthetic peptide   FL S
• [gmx-users] Get a correct .pdb for a synthetic peptide   FL S
  • [gmx-users] Get a correct .pdb for a synthetic peptide   Sotirios Dionysios I. Papadatos
    • [gmx-users] Get a correct .pdb for a synthetic peptide   Tomasz Piskorz
• [gmx-users] NVE Temperature Drop ONLY When Applying Restraints   Diez Fernandez, Amanda
• [gmx-users] Polymer Simulations   NIKHIL JOSHI
  • [gmx-users] Polymer Simulations   Justin Lemkul
    • [gmx-users] Polymer Simulations   NIKHIL JOSHI
      • [gmx-users] Polymer Simulations   NIKHIL JOSHI
      • [gmx-users] Polymer Simulations   Justin Lemkul
      • [gmx-users] Polymer Simulations   NIKHIL JOSHI
• [gmx-users] Regarding residue ...   Dilip H N
• [gmx-users] Regarding Residue..   Dilip H N
  • [gmx-users] Regarding Residue..   Justin Lemkul
    • [gmx-users] Regarding Residue..   Dilip H N
      • [gmx-users] Regarding Residue..   Justin Lemkul
• [gmx-users] Calculating area per lipid and monolayer thickness   Merril Mathew
  • [gmx-users] Calculating area per lipid and monolayer thickness   Justin Lemkul
    • [gmx-users] Calculating area per lipid and monolayer thickness   Merril Mathew
      • [gmx-users] Calculating area per lipid and monolayer thickness   Justin Lemkul
      • [gmx-users] Calculating area per lipid and monolayer thickness   Merril Mathew
      • [gmx-users] Calculating area per lipid and monolayer thickness   Justin Lemkul
      • [gmx-users] Calculating area per lipid and monolayer thickness   Merril Mathew
• [gmx-users] Question regarding lipid bilayer pore formation   ali.khourshaei71 at student.sharif.edu
  • [gmx-users] Question regarding lipid bilayer pore formation   Justin Lemkul
• [gmx-users] Use of input -nr to calculate order parameter   Wally Davis
• [gmx-users] Use of -nr for order parameters   Wally Davis
  • [gmx-users] Use of -nr for order parameters   Justin Lemkul
    • [gmx-users] Use of -nr for order parameters   Wally Davis
      • [gmx-users] Use of -nr for order parameters   Justin Lemkul
• [gmx-users] Question regarding rebuilding the simulation box   ali.khourshaei71 at student.sharif.edu
  • [gmx-users] Question regarding rebuilding the simulation box   Justin Lemkul
• [gmx-users] Regarding Umbrella sampling   Amir Zeb
  • [gmx-users] Regarding Umbrella sampling   Justin Lemkul
    • [gmx-users] Regarding Umbrella sampling   Amir Zeb
      • [gmx-users] Regarding Umbrella sampling   Justin Lemkul
      • [gmx-users] Regarding Umbrella sampling   Amir Zeb
• [gmx-users] I want to drag two atoms together with GROMCS SMD options.   Vytautas Rakeviius
  • [gmx-users] I want to drag two atoms together with GROMCS SMD options.   Justin Lemkul
• [gmx-users] Performance advice for newest Pascal architecture   Téletchéa Stéphane
  • [gmx-users] Performance advice for newest Pascal architecture   Mark Abraham
  • [gmx-users] Performance advice for newest Pascal architecture   Szilárd Páll
• [gmx-users] need help !   electronsource at free.fr
  • [gmx-users] need help !   Mark Abraham
    • [gmx-users] need help !   electronsource at free.fr
      • [gmx-users] need help !   Mark Abraham
      • [gmx-users] need help !   electronsource at free.fr
• [gmx-users] Order parameter for double bonded lipids   Merril Mathew
  • [gmx-users] Order parameter for double bonded lipids   Thomas Piggot
    • [gmx-users] Order parameter for double bonded lipids   Merril Mathew
      • [gmx-users] Order parameter for double bonded lipids   Thomas Piggot
      • [gmx-users] Order parameter for double bonded lipids   Merril Mathew
      • [gmx-users] Order parameter for double bonded lipids   Thomas Piggot
      • [gmx-users] Order parameter for double bonded lipids   Merril Mathew
      • [gmx-users] Order parameter for double bonded lipids   Merril Mathew
      • [gmx-users] Order parameter for double bonded lipids   Thomas Piggot
      • [gmx-users] Order parameter for double bonded lipids   Merril Mathew
      • [gmx-users] Order parameter for double bonded lipids   Merril Mathew
      • [gmx-users] Order parameter for double bonded lipids   Piggot T.
• [gmx-users] g_energy for comparing total energies of 2 similar systems   #SUKRITI GUPTA#
  • [gmx-users] g_energy for comparing total energies of 2 similar systems   Peter Kroon
• [gmx-users] I want to drag two atoms together with GROMCS SMD options.   Vytautas Rakeviius
  • [gmx-users] I want to drag two atoms together with GROMCS SMD options.   Justin Lemkul
• [gmx-users] g_hbond problems   andrea.correa at unina.it
  • [gmx-users] g_hbond problems   Justin Lemkul
• [gmx-users] mwa error in g_anaeig   Shubhangi Gupta
• [gmx-users] Question regarding calculation of thickness using GridMAT-MD   ali.khourshaei71 at student.sharif.edu
  • [gmx-users] Question regarding calculation of thickness using GridMAT-MD   Justin Lemkul
• [gmx-users] gmx density scripting?   Dayhoff, Guy
  • [gmx-users] gmx density scripting?   Justin Lemkul
• [gmx-users] Problem to create topology using Amber force fields for single zitterionic amino acids.   Qaisrani Muhammad Nawaz
• [gmx-users] UMBRELLA SAMPLING   Subashini .K
• [gmx-users] lincs warnin threshold   fatemeh ramezani
  • [gmx-users] Fw: lincs warnin threshold   fatemeh ramezani
• [gmx-users] pdb2gmx generates very large .top for lipids with charmm36-nov2016.ff   Jonathan Saboury
  • [gmx-users] pdb2gmx generates very large .top for lipids with charmm36-nov2016.ff   Justin Lemkul
    • [gmx-users] pdb2gmx generates very large .top for lipids with charmm36-nov2016.ff   Jonathan Saboury
      • [gmx-users] pdb2gmx generates very large .top for lipids with charmm36-nov2016.ff   Jonathan Saboury
• [gmx-users] Workstation   Suneth Rajapaksha
• [gmx-users] Workstation   Nikhil Maroli
  • [gmx-users] Workstation   Suneth Rajapaksha
• [gmx-users] Coulomb energy with cutoff-schemes verlet and group   Donnini, Serena
  • [gmx-users] Coulomb energy with cutoff-schemes verlet and group   Mark Abraham
• [gmx-users] error while writing an xtc file   electronsource at free.fr
• [gmx-users] pdb2gmx fails on CHARMM36 terminal group   Davit Hakobyan
  • [gmx-users] pdb2gmx fails on CHARMM36 terminal group   Mark Abraham
    • [gmx-users] pdb2gmx fails on CHARMM36 terminal group   Davit Hakobyan
      • [gmx-users] pdb2gmx fails on CHARMM36 terminal group   Mark Abraham
      • [gmx-users] pdb2gmx fails on CHARMM36 terminal group   Davit Hakobyan
      • [gmx-users] pdb2gmx fails on CHARMM36 terminal group   Justin Lemkul
      • [gmx-users] pdb2gmx fails on CHARMM36 terminal group   Davit Hakobyan
      • [gmx-users] pdb2gmx fails on CHARMM36 terminal group   Davit Hakobyan
      • [gmx-users] pdb2gmx fails on CHARMM36 terminal group   Justin Lemkul
• [gmx-users] PMF, Enthalpy, Entropy   Alex
  • [gmx-users] PMF, Enthalpy, Entropy   Justin Lemkul
    • [gmx-users] PMF, Enthalpy, Entropy   David van der Spoel
• [gmx-users] Dummy atom in OPLS acetonitrile   Thompson, Matthew White
  • [gmx-users] Dummy atom in OPLS acetonitrile   Mark Abraham
• [gmx-users] lincs warning   fatemeh ramezani
  • [gmx-users] lincs warning   Justin Lemkul
• [gmx-users] Computational electrophysiology, implicit solvent and coarse-grained system: atom/molecule definitions?   Vries, de, H.W.
  • [gmx-users] Computational electrophysiology, implicit solvent and coarse-grained system: atom/molecule definitions?   Kutzner, Carsten
• [gmx-users] Simulation queries   Acqualine Lobo
  • [gmx-users] Simulation queries   Justin Lemkul
  • [gmx-users] Simulation queries   Catarina A. Carvalheda dos Santos
    • [gmx-users] Simulation queries   Acqualine Lobo
      • [gmx-users] Simulation queries   Justin Lemkul
• [gmx-users] chainsep in pdb2gmx   Urszula Uciechowska
  • [gmx-users] chainsep in pdb2gmx   Justin Lemkul
• [gmx-users] GROMACS 2016.3 released   Mark Abraham
• [gmx-users] How to define cross-linking bonds   Jon Mujika
  • [gmx-users] How to define cross-linking bonds   Justin Lemkul
• [gmx-users] Coulomb energy with cutoff-schemes verlet and   Donnini, Serena
• [gmx-users] POSRES for umbrella sampling   stellatof
  • [gmx-users] POSRES for umbrella sampling   Justin Lemkul
• [gmx-users] Distance restraints on two TYR OH groups so that they are together   Vytautas Rakeviius
  • [gmx-users] Distance restraints on two TYR OH groups so that they are together   Justin Lemkul
    • [gmx-users] Distance restraints on two TYR OH groups so that they are together   Vytautas Rakeviius
• [gmx-users] Gromacs installation on GPU   Andrew Bostick
  • [gmx-users] Gromacs installation on GPU   Justin Lemkul
    • [gmx-users] Gromacs installation on GPU   Mark Abraham
• [gmx-users] Makeing movies using VMD   Poncho Arvayo Zatarain
  • [gmx-users] Makeing movies using VMD   Mark Abraham
    • [gmx-users] Makeing movies using VMD   Andrea Spitaleri
• [gmx-users] EM did not converge crashing drude system   Dayhoff, Guy
  • [gmx-users] EM did not converge crashing drude system   Justin Lemkul
• [gmx-users] Problem with combining the .edr files   Mohsen Ramezanpour
  • [gmx-users] Problem with combining the .edr files   Mark Abraham
    • [gmx-users] Problem with combining the .edr files   Mohsen Ramezanpour
• [gmx-users] Box size problem   Davit Hakobyan
  • [gmx-users] Box size problem   Justin Lemkul
• [gmx-users] Lipid head movement normal to monolayer.   Merril Mathew
  • [gmx-users] Lipid head movement normal to monolayer.   Catarina A. Carvalheda dos Santos
    • [gmx-users] Lipid head movement normal to monolayer.   Merril Mathew
• [gmx-users] Area per lipid through the time lipid membranes and mixed membranes   Poncho Arvayo Zatarain
• [gmx-users] How to calculate the MSD of center of mass of molecules   Zheng Gong
• [gmx-users] Peptide orientation in lipid bilayers   Sanket Ghawali
  • [gmx-users] Peptide orientation in lipid bilayers   Justin Lemkul
• [gmx-users] COMMAND TO DISPLAY SIMULATION COMPLETION TIME   Kulkarni R
• [gmx-users] COMMAND TO DISPLAY SIMULATION COMPLETION TIME   Nikhil Maroli
  • [gmx-users] COMMAND TO DISPLAY SIMULATION COMPLETION TIME   Kulkarni R
• [gmx-users] Error in free energy calculation   Tasneem Kausar
  • [gmx-users] Error in free energy calculation   Vytautas Rakeviius
    • [gmx-users] Error in free energy calculation   Hannes Loeffler
      • [gmx-users] Error in free energy calculation   Vytautas Rakeviius
  • [gmx-users] Error in free energy calculation   Hannes Loeffler
  • [gmx-users] Error in free energy calculation   Justin Lemkul
  • [gmx-users] Error in free energy calculation   Amir Zeb
    • [gmx-users] Error in free energy calculation   Tasneem Kausar
• [gmx-users] LINEAR INTERACTION ENERGY   Kulkarni R
  • [gmx-users] LINEAR INTERACTION ENERGY   Vytautas Rakeviius
    • [gmx-users] LINEAR INTERACTION ENERGY   Kulkarni R
      • [gmx-users] LINEAR INTERACTION ENERGY   Vytautas Rakeviius
• [gmx-users] converting with trjconv   Oleksii Zdorevskyi
  • [gmx-users] converting with trjconv   Mark Abraham
    • [gmx-users] converting with trjconv   Oleksii Zdorevskyi
• [gmx-users] Calcium ions in GMXPBSA approch   Mahboobeh Eslami
• [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs   Devashish_Das
  • [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs   Justin Lemkul
• [gmx-users] Running GROMACS on cluster   Yasser Almeida Hernández
  • [gmx-users] Running GROMACS on cluster   Justin Lemkul
• [gmx-users] Doubt from force constant calculations   Rakesh Pant
  • [gmx-users] Doubt from force constant calculations   Justin Lemkul
    • [gmx-users] Doubt from force constant calculations   Rakesh Pant
      • [gmx-users] Doubt from force constant calculations   Justin Lemkul
• [gmx-users] MDRUN doesn't print Hessian Matrix as ordered.   Juan José Galano Frutos
  • [gmx-users] MDRUN doesn't print Hessian Matrix as ordered.   Justin Lemkul
• [gmx-users] MDRUN doesn't print Hessian Matrix as ordered   Juan José Galano Frutos
  • [gmx-users] MDRUN doesn't print Hessian Matrix as ordered   Justin Lemkul
• [gmx-users] protein-ligand complex mdrun errors   Vignesh Waran
  • [gmx-users] protein-ligand complex mdrun errors   Justin Lemkul
• [gmx-users] Restarting a simulation when checkpoint files are corrupted   David Dotson
  • [gmx-users] Restarting a simulation when checkpoint files are corrupted   Mark Abraham
    • [gmx-users] Restarting a simulation when checkpoint files are corrupted   David Dotson
• [gmx-users] Setting Up "Equivalent" Runs With -notunepme   Tim Connolly
• [gmx-users] (no subject)   Sanim Rahman
  • [gmx-users] (no subject)   Sanim Rahman
    • [gmx-users] (no subject)   Justin Lemkul
      • [gmx-users] (no subject)   Sanim Rahman
• [gmx-users] protein-ligand complex mdrun errors   Vignesh Waran
• [gmx-users] protein-ligand complex mdrun errors   Vignesh Waran
• [gmx-users] Dihedral restraint in explicit water   Anurag Kumar
  • [gmx-users] Dihedral restraint in explicit water   Justin Lemkul
• [gmx-users] MDRUN doesn't print Hessian Matrix as ordered   Juan José Galano Frutos
  • [gmx-users] MDRUN doesn't print Hessian Matrix as ordered   Justin Lemkul
• [gmx-users] Surface tension/pressure calculation   Merril Mathew
• [gmx-users] Pressure problem in EM simulation   Mishelle Oña
  • [gmx-users] Pressure problem in EM simulation   Justin Lemkul
    • [gmx-users] Pressure problem in EM simulation   Mishelle Oña
      • [gmx-users] Pressure problem in EM simulation   Justin Lemkul
      • [gmx-users] Pressure problem in EM simulation   Mark Abraham
• [gmx-users] topology file construction   abhisek Mondal
  • [gmx-users] topology file construction   abhisek Mondal
    • [gmx-users] topology file construction   Justin Lemkul
• [gmx-users] Pressure in NPT simulation   Mishelle Oña
  • [gmx-users] Pressure in NPT simulation   Justin Lemkul
    • [gmx-users] Pressure in NPT simulation   Mishelle Oña
      • [gmx-users] Pressure in NPT simulation   Justin Lemkul
• [gmx-users] Pressure and box volume   Mishelle Oña
  • [gmx-users] Pressure and box volume   Justin Lemkul
    • [gmx-users] Pressure and box volume   Mishelle Oña
      • [gmx-users] Pressure and box volume   Mark Abraham
• [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs   Devashish_Das
  • [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs   Justin Lemkul
    • [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs   Devashish_Das
      • [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs   Justin Lemkul
• [gmx-users] How to access recent discussion on gmx-user list?   Amir Zeb
  • [gmx-users] How to access recent discussion on gmx-user list?   Devashish_Das
    • [gmx-users] How to access recent discussion on gmx-user list?   Amir Zeb
• [gmx-users] topology for charmm   RAHUL SURESH
  • [gmx-users] topology for charmm   Justin Lemkul
• [gmx-users] mdp options for REMD   YanhuaOuyang
  • [gmx-users] mdp options for REMD   Mark Abraham
    • [gmx-users] mdp options for REMD   YanhuaOuyang
      • [gmx-users] mdp options for REMD   Mark Abraham
• [gmx-users] NORMAL MODES analysis to compute specific heats   Juan José Galano Frutos
  • [gmx-users] NORMAL MODES analysis to compute specific heats   Justin Lemkul
• [gmx-users] Regarding Radial Distribution Functions   Dilip H N
  • [gmx-users] Regarding Radial Distribution Functions   Mark Abraham
    • [gmx-users] Regarding Radial Distribution Functions   Dilip H N
      • [gmx-users] Regarding Radial Distribution Functions   Mark Abraham
      • [gmx-users] Regarding Radial Distribution Functions   Dilip H N
      • [gmx-users] Regarding Radial Distribution Functions   Dilip H N
      • [gmx-users] Regarding Radial Distribution Functions   Mark Abraham
• [gmx-users] Index is larger than the number of atoms in the trajectory file   Mahboobeh Eslami
  • [gmx-users] Index is larger than the number of atoms in the trajectory file   Justin Lemkul
• [gmx-users] Regarding extending simulations   Dilip H N
  • [gmx-users] Regarding extending simulations   Mark Abraham
• [gmx-users] query about structural consistency   abhisek Mondal
  • [gmx-users] query about structural consistency   Mark Abraham
    • [gmx-users] query about structural consistency   abhisek Mondal
  • [gmx-users] query about structural consistency   Hannes Loeffler
    • [gmx-users] query about structural consistency   abhisek Mondal
• [gmx-users] Topology for charmm   RAHUL SURESH
  • [gmx-users] Topology for charmm   Justin Lemkul
• [gmx-users] Fwd: CNT Water and DNA protein, Not working   Abhishek Agrawal
• [gmx-users] DSSP   Aishwarya Dhar
  • [gmx-users] DSSP   Justin Lemkul
    • [gmx-users] DSSP   Aishwarya Dhar
• [gmx-users] NORMAL MODES analysis to compute specific heats   Juan José Galano Frutos
• [gmx-users] Fwd: CNT Water and DNA protein, Not working   Abhishek Agrawal
• [gmx-users] g_mmpbsa   Kulkarni R
• [gmx-users] Structure blowing up after increased the temperature   Sameer Edirisinghe
  • [gmx-users] Structure blowing up after increased the temperature   Justin Lemkul
• [gmx-users] NORMAL MODES analysis to compute specific heats   Juan José Galano Frutos
• [gmx-users] Water molecule starting at atom 39087 can not be settled   liming_52
  • [gmx-users] Water molecule starting at atom 39087 can not be settled   Justin Lemkul
    • [gmx-users] Water molecule starting at atom 39087 can not be settled   liming_52
      • [gmx-users] Water molecule starting at atom 39087 can not be settled   Justin Lemkul
• [gmx-users] Structure blowing up after increased the temperature   Sameer Edirisinghe
  • [gmx-users] Structure blowing up after increased the temperature   Justin Lemkul
• [gmx-users] Topology CHarmm   RAHUL SURESH
  • [gmx-users] Topology CHarmm   Justin Lemkul
• [gmx-users] sum of the two largest charge group radii is larger than rlist   abhisek Mondal
  • [gmx-users] sum of the two largest charge group radii is larger than rlist   abhisek Mondal
• [gmx-users] mindist in gromacs   gozde ergin
• [gmx-users] core dumped during equilibration in gromacs   ISHRAT JAHAN
  • [gmx-users] core dumped during equilibration in gromacs   Mark Abraham
    • [gmx-users] core dumped during equilibration in gromacs   ISHRAT JAHAN
• [gmx-users] Charmm (cgenff) Str file   RAHUL SURESH
  • [gmx-users] Charmm (cgenff) Str file   Justin Lemkul
• [gmx-users] can anyone plx help me with the problem Listed nonbonded interaction between particles 112 and 120 at distance 3f which is larger than the table limit 3f nm.   Rapunzel Eugene
  • [gmx-users] can anyone plx help me with the problem Listed nonbonded interaction between particles 112 and 120 at distance 3f which is larger than the table limit 3f nm.   Justin Lemkul
• [gmx-users] g(r)   Sanket Ghawali
  • [gmx-users] g(r)   Mark Abraham
• [gmx-users] core dumped during equilibration in gromacs   Mark Abraham
  • [gmx-users] core dumped during equilibration in gromacs   ISHRAT JAHAN
    • [gmx-users] core dumped during equilibration in gromacs   Mark Abraham
      • [gmx-users] core dumped during equilibration in gromacs   ISHRAT JAHAN
      • [gmx-users] core dumped during equilibration in gromacs   Mark Abraham
• [gmx-users] ORCA Gromacs QM/MM geometry optimization   Jim-Martin Bachmann
• [gmx-users] g(r)   Sanket Ghawali
  • [gmx-users] g(r)   Mark Abraham
• [gmx-users] Regarding trajectories   Dilip H N
  • [gmx-users] Regarding trajectories   Marlon Sidore
• [gmx-users] GPU computing for explicit solvation systems   mina solhtalab
  • [gmx-users] GPU computing for explicit solvation systems   Justin Lemkul
• [gmx-users] area per headgroup over the course of simulation   Poncho Arvayo Zatarain
• [gmx-users] Regarding RDF, Trajectories   Dilip H N
  • [gmx-users] Regarding RDF, Trajectories   Mark Abraham
• [gmx-users] Using higher precision with gmx distance and analyze   Irem Altan
  • [gmx-users] Using higher precision with gmx distance and analyze   Mark Abraham
• [gmx-users] COEFFICIENT FOR LINEAR INTERACTION ENERGY IN PROTEIN LIGAND COMPLEX   Neha Gupta
  • [gmx-users] COEFFICIENT FOR LINEAR INTERACTION ENERGY IN PROTEIN LIGAND COMPLEX   Vytautas Rakeviius
• [gmx-users] g_membed or alternative on GROMACS 2016   Vytautas Rakeviius
  • [gmx-users] g_membed or alternative on GROMACS 2016   Kutzner, Carsten
• [gmx-users] HOW TO INSTALL G_MMPBSA IN WINDOWS 7, 64 BIT   Neha Gupta
• [gmx-users] Align a vector with an axis of the box   Chalaoux, Francois-Regis
  • [gmx-users] Align a vector with an axis of the box   Mark Abraham
    • [gmx-users] Align a vector with an axis of the box   Chalaoux, Francois-Regis
• [gmx-users] Align a vector with an axis of the box   Chalaoux, Francois-Regis
• [gmx-users] Regarding Glycine structure   Dilip H N
  • [gmx-users] Regarding Glycine structure   Dilip H N
  • [gmx-users] Regarding Glycine structure   Justin Lemkul
    • [gmx-users] Regarding Glycine structure   Dilip H N
      • [gmx-users] Regarding Glycine structure   Justin Lemkul
      • [gmx-users] Regarding Glycine structure   Dilip H N
      • [gmx-users] Regarding Glycine structure   Justin Lemkul
      • [gmx-users] Regarding Glycine structure   Dilip H N
      • [gmx-users] Regarding Glycine structure   Justin Lemkul
• [gmx-users] gmx bar histogram data   Eric Smoll
  • [gmx-users] gmx bar histogram data   Justin Lemkul
• [gmx-users] Calculate area per head group   Poncho Arvayo Zatarain
  • [gmx-users] Calculate area per head group   Justin Lemkul
• [gmx-users] (no subject)   Dilip H N
• [gmx-users] Regarding structure   Dilip H N
  • [gmx-users] Regarding structure   Jonathan Saboury
    • [gmx-users] Regarding structure   Vytautas Rakeviius
    • [gmx-users] Regarding structure   Dilip H N
• [gmx-users] Pull code grompp error   Souparno Adhikary
  • [gmx-users] Pull code grompp error   Tasneem Kausar
    • [gmx-users] Pull code grompp error   Souparno Adhikary
      • [gmx-users] Pull code grompp error   Justin Lemkul
• [gmx-users] Analysis pull code simulation data to obtain Strain Stress curve   Md. Imrul Reza Shishir
  • [gmx-users] Analysis pull code simulation data to obtain Strain Stress curve   Alex
    • [gmx-users] Analysis pull code simulation data to obtain Strain Stress curve   Md. Imrul Reza Shishir
      • [gmx-users] Analysis pull code simulation data to obtain Strain Stress curve   Alex
• [gmx-users] FSync error   Souparno Adhikary
  • [gmx-users] FSync error   Mark Abraham
    • [gmx-users] FSync error   Souparno Adhikary
• [gmx-users] Getting charges of the system out of the simulation in human-readable form   Marko Sever
  • [gmx-users] Getting charges of the system out of the simulation in human-readable form   Mark Abraham
• [gmx-users] COMMAND IN HBOND   Neha Gupta
  • [gmx-users] COMMAND IN HBOND   Erik Marklund
    • [gmx-users] COMMAND IN HBOND   Neha Gupta
      • [gmx-users] COMMAND IN HBOND   Tasneem Kausar
      • [gmx-users] COMMAND IN HBOND   Neha Gupta
• [gmx-users] membed software inconsistency error   Jason Mast
• [gmx-users] Clarification for the meaning of ncoords in GROMACS 5.0.4 pull code   Sajeewa Pemasinghe
  • [gmx-users] Clarification for the meaning of ncoords in GROMACS 5.0.4 pull code   Justin Lemkul
    • [gmx-users] Clarification for the meaning of ncoords in GROMACS 5.0.4 pull code   Sajeewa Pemasinghe
• [gmx-users] Adding external magnetic filed to GROMACS   Sam Dav
  • [gmx-users] Adding external magnetic filed to GROMACS   Alex
    • [gmx-users] Adding external magnetic filed to GROMACS   Sam Dav
• [gmx-users] calculation of self energy of protein   Saumyak Mukherjee
  • [gmx-users] calculation of self energy of protein   Souparno Adhikary
    • [gmx-users] calculation of self energy of protein   Saumyak Mukherjee
      • [gmx-users] calculation of self energy of protein   Justin Lemkul
      • [gmx-users] calculation of self energy of protein   Saumyak Mukherjee
      • [gmx-users] calculation of self energy of protein   Justin Lemkul
      • [gmx-users] calculation of self energy of protein   Saumyak Mukherjee
      • [gmx-users] calculation of self energy of protein   Saumyak Mukherjee
      • [gmx-users] calculation of self energy of protein   Justin Lemkul
• [gmx-users] Need for a clarification between "umbrella restraints" and value for "ncoords" in GROMACS pull code   Sajeewa Pemasinghe
  • [gmx-users] Need for a clarification between "umbrella restraints" and value for "ncoords" in GROMACS pull code   Justin Lemkul
    • [gmx-users] Need for a clarification between "umbrella restraints" and value for "ncoords" in GROMACS pull code   Sajeewa Pemasinghe
• [gmx-users] Secondary structure analysis   RAHUL SURESH
  • [gmx-users] Secondary structure analysis   Justin Lemkul
    • [gmx-users] Secondary structure analysis   Souparno Adhikary
      • [gmx-users] Secondary structure analysis   RAHUL SURESH
      • [gmx-users] Secondary structure analysis   Justin Lemkul
• [gmx-users] Gromacs for polymer and biomolecule system   Riya Rogers
  • [gmx-users] Gromacs for polymer and biomolecule system   Justin Lemkul
• [gmx-users] Gromacs for polymer and biomolecule system   Riya Rogers
• [gmx-users] Protein preparation   Quin K
  • [gmx-users] Protein preparation   Justin Lemkul
    • [gmx-users] Protein preparation   Quin K
      • [gmx-users] Protein preparation   Justin Lemkul
      • [gmx-users] Protein preparation   Rasika Kelum
      • [gmx-users] Protein preparation   Justin Lemkul
      • [gmx-users] Protein preparation   Quin K
      • [gmx-users] Protein preparation   Justin Lemkul
• [gmx-users] Replica exchange: exchanging pressures   Ramon Crehuet Simon
  • [gmx-users] Replica exchange: exchanging pressures   Justin Lemkul
• [gmx-users] Using the md integrator for calculating free energy of solvation   Dan Gil
  • [gmx-users] Using the md integrator for calculating free energy of solvation   Justin Lemkul
• [gmx-users] Lipid water simulation   Sheikh Imamul Hossain
  • [gmx-users] Lipid water simulation   Peter Kroon
• [gmx-users] MMPBSA analysis on GROMACS trajectory   Neha Gupta
  • [gmx-users] MMPBSA analysis on GROMACS trajectory   masoud keramati
    • [gmx-users] MMPBSA analysis on GROMACS trajectory   Neha Gupta
• [gmx-users] PMF - US histograms problem   Eudes Fileti
  • [gmx-users] PMF - US histograms problem   Sajeewa Pemasinghe
• [gmx-users] forcefield installation on GROMACS 5.1.4   Simon Kit Sang Chu
  • [gmx-users] forcefield installation on GROMACS 5.1.4   Justin Lemkul
    • [gmx-users] forcefield installation on GROMACS 5.1.4   Simon Kit Sang Chu
      • [gmx-users] forcefield installation on GROMACS 5.1.4   Justin Lemkul
• [gmx-users] solvate with hexagonal box   Erik Marklund
  • [gmx-users] solvate with hexagonal box   Mark Abraham
    • [gmx-users] solvate with hexagonal box   Erik Marklund
      • [gmx-users] solvate with hexagonal box   Erik Marklund
• [gmx-users] Restraining Protein-ligand distance   Juan José Galano Frutos
  • [gmx-users] Restraining Protein-ligand distance   Justin Lemkul
• [gmx-users] Extracting Energy of Individual Molecules From Energy File   Kelechi Okoroafor
  • [gmx-users] Extracting Energy of Individual Molecules From Energy File   Justin Lemkul
• [gmx-users] performance issue with many short MD runs   Michael Brunsteiner
  • [gmx-users] performance issue with many short MD runs   Peter Kroon
    • [gmx-users] performance issue with many short MD runs   Mark Abraham
• [gmx-users] Fwd: How to calculate Hydrophobic and Hydrophilic SASA separately in latest version of gromacs?   spss4 at iacs.res.in
• [gmx-users] Gromacs and Radeon Nano   melichercik at nh.cas.cz
• [gmx-users] Unbiased or biased   m g
  • [gmx-users] Unbiased or biased   Justin Lemkul
• [gmx-users] topology   RAHUL SURESH
  • [gmx-users] topology   Justin Lemkul
    • [gmx-users] topology   RAHUL SURESH
      • [gmx-users] topology   Justin Lemkul
• [gmx-users] Is My NPT Density High?   Jonathan Saboury
  • [gmx-users] Is My NPT Density High?   Justin Lemkul
• [gmx-users] Extracting Energy of Individual Molecules From Energy File   Kelechi Okoroafor
• [gmx-users] protein-ligand   RAHUL SURESH
  • [gmx-users] protein-ligand   Justin Lemkul
    • [gmx-users] protein-ligand   RAHUL SURESH
      • [gmx-users] protein-ligand   Justin Lemkul
      • [gmx-users] protein-ligand   RAHUL SURESH
      • [gmx-users] protein-ligand   Justin Lemkul
      • [gmx-users] protein-ligand   RAHUL SURESH
• [gmx-users] Help in a thermalization   Graziele Bortolini
  • [gmx-users] Help in a thermalization   Justin Lemkul
    • [gmx-users] Help in a thermalization   Graziele Bortolini
      • [gmx-users] Help in a thermalization   Justin Lemkul
      • [gmx-users] Help in a thermalization   Graziele Bortolini
      • [gmx-users] Help in a thermalization   Justin Lemkul
      • [gmx-users] Help in a thermalization   Graziele Bortolini
• [gmx-users] Fwd: How to calculate Hydrophobic and Hydrophilic SASA separately in latest version of gromacs?   spss4 at iacs.res.in
  • [gmx-users] Fwd: How to calculate Hydrophobic and Hydrophilic SASA separately in latest version of gromacs?   Mark Abraham
    • [gmx-users] Fwd: How to calculate Hydrophobic and Hydrophilic SASA separately in latest version of gromacs?   spss4 at iacs.res.in
• [gmx-users] Bond energy difference between CHARMM and GROMACS   Yvon Wong
  • [gmx-users] Bond energy difference between CHARMM and GROMACS   David van der Spoel
  • [gmx-users] Bond energy difference between CHARMM and GROMACS   Erik Marklund
    • [gmx-users] Bond energy difference between CHARMM and GROMACS   Justin Lemkul
      • [gmx-users] Bond energy difference between CHARMM and GROMACS   Mark Abraham
• [gmx-users] MD for inorganic compound   Anjali Patel
  • [gmx-users] MD for inorganic compound   Justin Lemkul
• [gmx-users] performance issue with many short MD runs   Michael Brunsteiner
• [gmx-users] dihedral restrains fail in free energy calculation   Ahmet Yıldırım
  • [gmx-users] dihedral restrains fail in free energy calculation   Justin Lemkul
• [gmx-users] rotation while pulling   gromacs query
• [gmx-users] Pull Code constant value   Souparno Adhikary
  • [gmx-users] Pull Code constant value   Vytautas Rakeviius
• [gmx-users] About msd and lateral diffussion command   Poncho Arvayo Zatarain
  • [gmx-users] About msd and lateral diffussion command   Justin Lemkul
• [gmx-users] Replica Exchange for surface tension   gozde ergin
  • [gmx-users] Replica Exchange for surface tension   Justin Lemkul
    • [gmx-users] Replica Exchange for surface tension   gozde ergin
      • [gmx-users] Replica Exchange for surface tension   Justin Lemkul
      • [gmx-users] Replica Exchange for surface tension   gozde ergin
      • [gmx-users] Replica Exchange for surface tension   Justin Lemkul
      • [gmx-users] Replica Exchange for surface tension   gozde ergin
      • [gmx-users] Replica Exchange for surface tension   Justin Lemkul
      • [gmx-users] Replica Exchange for surface tension   gozde ergin
      • [gmx-users] Replica Exchange for surface tension   gozde ergin
      • [gmx-users] Replica Exchange for surface tension   Justin Lemkul
      • [gmx-users] Replica Exchange for surface tension   gozde ergin
      • [gmx-users] Replica Exchange for surface tension   Justin Lemkul
• [gmx-users] MD for inorganic compound   Michael Brunsteiner
  • [gmx-users] MD for inorganic compound   André Farias de Moura
• [gmx-users] importance of nvlink in GPU nodes?   Christopher Neale
  • [gmx-users] importance of nvlink in GPU nodes?   Mark Abraham
    • [gmx-users] importance of nvlink in GPU nodes?   Szilárd Páll
      • [gmx-users] importance of nvlink in GPU nodes?   Christopher Neale
• [gmx-users] potential energy of a system   Saumyak Mukherjee
  • [gmx-users] potential energy of a system   Mark Abraham
    • [gmx-users] potential energy of a system   Justin Lemkul
      • [gmx-users] potential energy of a system   Saumyak Mukherjee
• [gmx-users] NVE run   Neda Rafiee
  • [gmx-users] NVE run   Mark Abraham
    • [gmx-users] NVE run   Neda Rafiee
• [gmx-users] Dipole moment of water   Alex
• [gmx-users] mdrun error   amitbehra at chemeng.iisc.ernet.in
  • [gmx-users] mdrun error   Justin Lemkul
• [gmx-users] Format for predefined positions insert-molecules   Svetomir Hitov
  • [gmx-users] Format for predefined positions insert-molecules   Justin Lemkul
• [gmx-users] Box dimensions in the gro file are not read by GROMACS   Sajeewa Pemasinghe
  • [gmx-users] Box dimensions in the gro file are not read by GROMACS   Justin Lemkul
    • [gmx-users] Box dimensions in the gro file are not read by GROMACS   Sajeewa Pemasinghe
      • [gmx-users] Box dimensions in the gro file are not read by GROMACS   Sajeewa Pemasinghe
      • [gmx-users] Box dimensions in the gro file are not read by GROMACS   Sajeewa Pemasinghe
      • [gmx-users] Box dimensions in the gro file are not read by GROMACS   Sajeewa Pemasinghe
• [gmx-users] Box dimensions in the gro file are not read by GROMACS (correcting an error in the previous question)   Sajeewa Pemasinghe
• [gmx-users] terminated abnormally, message of GridMAT-MD tool   Мижээ Батсайхан
  • [gmx-users] terminated abnormally, message of GridMAT-MD tool   Justin Lemkul
• [gmx-users] QUERY IN GRO FILE   Neha Gupta
  • [gmx-users] QUERY IN GRO FILE   Peter Stern
• [gmx-users] gmx energy: error estimate?   Andreas Mecklenfeld
• [gmx-users] Gromacs - Radius of gyration   Mariusz Wierzbowski
  • [gmx-users] Gromacs - Radius of gyration   João Henriques
    • [gmx-users] Gromacs - Radius of gyration   João Henriques
• [gmx-users] QUERY IN GRO FILE   amitbehra at chemeng.iisc.ernet.in
• [gmx-users] Ligand topology   RAHUL SURESH
  • [gmx-users] Ligand topology   Mark Abraham
• [gmx-users] gromacs.org_gmx-users Digest, Vol 154, Issue 114   Dayhoff, Guy
• [gmx-users] Drude-2013 FF, hardwall constraint errors with swm4-ndp water   Dayhoff, Guy
• [gmx-users] Pdb2gmx   Lamm Gro
  • [gmx-users] Pdb2gmx   Saumyak Mukherjee
• [gmx-users] FAD parameters in CHRAMm36 ff   Amir Zeb
  • [gmx-users] FAD parameters in CHRAMm36 ff   Vytautas Rakeviius
    • [gmx-users] FAD parameters in CHRAMm36 ff   Justin Lemkul
      • [gmx-users] FAD parameters in CHRAMm36 ff   Amir Zeb
• [gmx-users] analysis of osmolyte at particular distance from backbone   ISHRAT JAHAN
• [gmx-users] vsites with CHARMM force fields   Ramon Crehuet Simon
  • [gmx-users] vsites with CHARMM force fields   Erik Marklund
• [gmx-users] equilibration and production run   Neha Gupta
• [gmx-users] calculating gbsa parameters for metal ion   Javaria ashraf
• [gmx-users] gmx xpm2ps   Kulkarni R
  • [gmx-users] gmx xpm2ps   Justin Lemkul
    • [gmx-users] gmx xpm2ps   Kulkarni R
  • [gmx-users] gmx xpm2ps   Diogo Vila Viçosa
    • [gmx-users] gmx xpm2ps   Kulkarni R
• [gmx-users] Restraining Protein-ligand distance   Juan José Galano Frutos
• [gmx-users] HYDROGEN BOND EXISTENCE MAP   Neha Gupta

Last message date: Fri Mar 31 19:11:15 CEST 2017
Archived on: Fri Mar 31 19:11:17 CEST 2017

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