March 2017 Archives by author

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Starting: Wed Mar 1 06:26:39 CET 2017
Ending: Fri Mar 31 19:11:15 CEST 2017
Messages: 808

[gmx-users] MM/Pbsa Kingsley Theras Primus Dass .
[gmx-users] HOW TO SPLIT RESIDUES Subashini .K
[gmx-users] topology Subashini .K
[gmx-users] UMBRELLA SAMPLING Subashini .K
[gmx-users] UMBRELLA SAMPLING Subashini .K
[gmx-users] Distance between centers of mass CROUZY Serge 119222
[gmx-users] Your confirmation is required to join the gromacs.org_gmx-users mailing list MRINAL ARANDHARA
[gmx-users] domain decomposition Error MRINAL ARANDHARA
[gmx-users] Domain Decomposition Error MRINAL ARANDHARA
[gmx-users] NPT equillabration Error bilayer MRINAL ARANDHARA
[gmx-users] domain decomposition Error MRINAL ARANDHARA
[gmx-users] domain decomposition Error MRINAL ARANDHARA
[gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff? Mark Abraham
[gmx-users] Catenation and sampling Mark Abraham
[gmx-users] MM/Pbsa Mark Abraham
[gmx-users] Gromac4.6.7 installation problem Mark Abraham
[gmx-users] Free energy calculations Mark Abraham
[gmx-users] Velocity as a function of distance Z (Mark Abraham) Mark Abraham
[gmx-users] Simulation crashes: issue with [pair] potential Mark Abraham
[gmx-users] force application group wise Mark Abraham
[gmx-users] force application group wise Mark Abraham
[gmx-users] linking error while trying to build gromacs Mark Abraham
[gmx-users] Velocity as a function of distance Z Mark Abraham
[gmx-users] Gromac4.6.7 installation problem Mark Abraham
[gmx-users] linking error while trying to build gromacs Mark Abraham
[gmx-users] Gromac4.6.7 installation problem Mark Abraham
[gmx-users] To invoke GPU in gromacs version 4.6.4 Mark Abraham
[gmx-users] NPT equilibration without pbc Mark Abraham
[gmx-users] fatal error Mark Abraham
[gmx-users] fatal error Mark Abraham
[gmx-users] running MD on gpu (Fatal error) Mark Abraham
[gmx-users] domain decomposition Error Mark Abraham
[gmx-users] domain decomposition Error Mark Abraham
[gmx-users] Meaning of columns in .xvg output file Mark Abraham
[gmx-users] Meaning of columns in .xvg output file Mark Abraham
[gmx-users] Meaning of columns in .xvg output file Mark Abraham
[gmx-users] domain decomposition Error Mark Abraham
[gmx-users] Question regarding rebuilding the simulation box Mark Abraham
[gmx-users] Question regarding rebuilding the simulation box Mark Abraham
[gmx-users] need help ! Mark Abraham
[gmx-users] need help ! Mark Abraham
[gmx-users] need help ! Mark Abraham
[gmx-users] pdb2gmx fails on CHARMM36 terminal group Mark Abraham
[gmx-users] pdb2gmx fails on CHARMM36 terminal group Mark Abraham
[gmx-users] Dummy atom in OPLS acetonitrile Mark Abraham
[gmx-users] Dummy atom in OPLS acetonitrile Mark Abraham
[gmx-users] GROMACS 2016.3 released Mark Abraham
[gmx-users] force application group wise Mark Abraham
[gmx-users] Coulomb energy with cutoff-schemes verlet and group Mark Abraham
[gmx-users] Performance advice for newest Pascal architecture Mark Abraham
[gmx-users] Performance advice for newest Pascal architecture Mark Abraham
[gmx-users] Gromacs installation on GPU Mark Abraham
[gmx-users] Makeing movies using VMD Mark Abraham
[gmx-users] Makeing movies using VMD Mark Abraham
[gmx-users] Problem with combining the .edr files Mark Abraham
[gmx-users] converting with trjconv Mark Abraham
[gmx-users] Restarting a simulation when checkpoint files are corrupted Mark Abraham
[gmx-users] Pressure problem in EM simulation Mark Abraham
[gmx-users] mdp options for REMD Mark Abraham
[gmx-users] Regarding Radial Distribution Functions Mark Abraham
[gmx-users] Pressure and box volume Mark Abraham
[gmx-users] Regarding Radial Distribution Functions Mark Abraham
[gmx-users] Regarding Radial Distribution Functions Mark Abraham
[gmx-users] mdp options for REMD Mark Abraham
[gmx-users] Regarding extending simulations Mark Abraham
[gmx-users] Regarding extending simulations Mark Abraham
[gmx-users] query about structural consistency Mark Abraham
[gmx-users] query about structural consistency Mark Abraham
[gmx-users] core dumped during equilibration in gromacs Mark Abraham
[gmx-users] g(r) Mark Abraham
[gmx-users] core dumped during equilibration in gromacs Mark Abraham
[gmx-users] g(r) Mark Abraham
[gmx-users] g(r) Mark Abraham
[gmx-users] core dumped during equilibration in gromacs Mark Abraham
[gmx-users] core dumped during equilibration in gromacs Mark Abraham
[gmx-users] Using higher precision with gmx distance and analyze Mark Abraham
[gmx-users] Regarding RDF, Trajectories Mark Abraham
[gmx-users] Align a vector with an axis of the box Mark Abraham
[gmx-users] FSync error Mark Abraham
[gmx-users] Getting charges of the system out of the simulation in human-readable form Mark Abraham
[gmx-users] performance issue with many short MD runs Mark Abraham
[gmx-users] solvate with hexagonal box Mark Abraham
[gmx-users] Fwd: How to calculate Hydrophobic and Hydrophilic SASA separately in latest version of gromacs? Mark Abraham
[gmx-users] Bond energy difference between CHARMM and GROMACS Mark Abraham
[gmx-users] NVE run Mark Abraham
[gmx-users] potential energy of a system Mark Abraham
[gmx-users] potential energy of a system Mark Abraham
[gmx-users] importance of nvlink in GPU nodes? Mark Abraham
[gmx-users] Ligand topology Mark Abraham
[gmx-users] Pull code grompp error Souparno Adhikary
[gmx-users] FSync error Souparno Adhikary
[gmx-users] FSync error Souparno Adhikary
[gmx-users] Pull code grompp error Souparno Adhikary
[gmx-users] calculation of self energy of protein Souparno Adhikary
[gmx-users] Secondary structure analysis Souparno Adhikary
[gmx-users] Pull Code constant value Souparno Adhikary
[gmx-users] Fwd: CNT Water and DNA protein, Not working Abhishek Agrawal
[gmx-users] Fwd: CNT Water and DNA protein, Not working Abhishek Agrawal
[gmx-users] NPT equilibration without pbc Alex
[gmx-users] NPT equilibration without pbc Alex
[gmx-users] NPT equilibration without pbc Alex
[gmx-users] To invoke GPU in gromacs version 4.6.4 Alex
[gmx-users] PMF, Enthalpy, Entropy Alex
[gmx-users] Analysis pull code simulation data to obtain Strain Stress curve Alex
[gmx-users] Adding external magnetic filed to GROMACS Alex
[gmx-users] Analysis pull code simulation data to obtain Strain Stress curve Alex
[gmx-users] Dipole moment of water Alex
[gmx-users] force application group wise Rana Ali
[gmx-users] Using higher precision with gmx distance and analyze Irem Altan
[gmx-users] PDB2GMX Fatal Error Syed Azeem
[gmx-users] PDB2GMX Fatal Error Syed Azeem
[gmx-users] PDB2GMX Fatal Error Syed Azeem
[gmx-users] ORCA Gromacs QM/MM geometry optimization Jim-Martin Bachmann
[gmx-users] Help in a thermalization Graziele Bortolini
[gmx-users] Help in a thermalization Graziele Bortolini
[gmx-users] Help in a thermalization Graziele Bortolini
[gmx-users] Help in a thermalization Graziele Bortolini
[gmx-users] running MD on gpu (Fatal error) Andrew Bostick
[gmx-users] Gromacs installation on GPU Andrew Bostick
[gmx-users] performance issue with many short MD runs Michael Brunsteiner
[gmx-users] performance issue with many short MD runs Michael Brunsteiner
[gmx-users] MD for inorganic compound Michael Brunsteiner
[gmx-users] MD for inorganic compound Michael Brunsteiner
[gmx-users] Gromacs with Plumed Giovanni Bussi
[gmx-users] Gromacs with Plumed Giovanni Bussi
[gmx-users] Analyzing Desmond trajectories using GROMACS tools zeineb SI CHAIB
[gmx-users] Analyzing Desmond trajectories using GROMACS tools zeineb SI CHAIB
[gmx-users] Analyzing Desmond trajectories using GROMACS tools zeineb SI CHAIB
[gmx-users] Align a vector with an axis of the box Chalaoux, Francois-Regis
[gmx-users] Align a vector with an axis of the box Chalaoux, Francois-Regis
[gmx-users] Align a vector with an axis of the box Chalaoux, Francois-Regis
[gmx-users] Charmm topologies for DHF/NADPH Nicolas Cheron
[gmx-users] forcefield installation on GROMACS 5.1.4 Simon Kit Sang Chu
[gmx-users] forcefield installation on GROMACS 5.1.4 Simon Kit Sang Chu
[gmx-users] Setting Up "Equivalent" Runs With -notunepme Tim Connolly
[gmx-users] segmentation fault in gmx hbond Dr. D. H. Dagade
[gmx-users] segmentation fault in gmx hbond Dr. D. H. Dagade
[gmx-users] segmentation fault in gmx hbond Dr. D. H. Dagade
[gmx-users] Adding external magnetic filed to GROMACS Sam Dav
[gmx-users] Adding external magnetic filed to GROMACS Sam Dav
[gmx-users] Use of input -nr to calculate order parameter Wally Davis
[gmx-users] Use of -nr for order parameters Wally Davis
[gmx-users] Use of -nr for order parameters Wally Davis
[gmx-users] gmx density scripting? Dayhoff, Guy
[gmx-users] EM did not converge crashing drude system Dayhoff, Guy
[gmx-users] gromacs.org_gmx-users Digest, Vol 154, Issue 114 Dayhoff, Guy
[gmx-users] Drude-2013 FF, hardwall constraint errors with swm4-ndp water Dayhoff, Guy
[gmx-users] Dihedral drivers and 2D Energy Plot in gromacs Devashish_Das
[gmx-users] Dihedral drivers and 2D Energy Plot in gromacs Devashish_Das
[gmx-users] How to access recent discussion on gmx-user list? Devashish_Das
[gmx-users] Dihedral drivers and 2D Energy Plot in gromacs Devashish_Das
[gmx-users] DSSP Aishwarya Dhar
[gmx-users] DSSP Aishwarya Dhar
[gmx-users] NVE Temperature Drop ONLY When Applying Restraints Diez Fernandez, Amanda
[gmx-users] Coulomb energy with cutoff-schemes verlet and group Donnini, Serena
[gmx-users] Coulomb energy with cutoff-schemes verlet and Donnini, Serena
[gmx-users] Restarting a simulation when checkpoint files are corrupted David Dotson
[gmx-users] Restarting a simulation when checkpoint files are corrupted David Dotson
[gmx-users] Structure blowing up after increased the temperature Sameer Edirisinghe
[gmx-users] Structure blowing up after increased the temperature Sameer Edirisinghe
[gmx-users] Dihedral PCA documentation Matthias Ernst
[gmx-users] Calcium ions in GMXPBSA approch Mahboobeh Eslami
[gmx-users] Index is larger than the number of atoms in the trajectory file Mahboobeh Eslami
[gmx-users] PDB2GMX Fatal Error Reza Esmaeili
[gmx-users] can anyone plx help me with the problem Listed nonbonded interaction between particles 112 and 120 at distance 3f which is larger than the table limit 3f nm. Rapunzel Eugene
[gmx-users] Distance between centers of mass ÁLVARO RODRIGO RUIZ FERNÁNDEZ
[gmx-users] PMF - US histograms problem Eudes Fileti
[gmx-users] MDRUN doesn't print Hessian Matrix as ordered. Juan José Galano Frutos
[gmx-users] MDRUN doesn't print Hessian Matrix as ordered Juan José Galano Frutos
[gmx-users] MDRUN doesn't print Hessian Matrix as ordered Juan José Galano Frutos
[gmx-users] NORMAL MODES analysis to compute specific heats Juan José Galano Frutos
[gmx-users] NORMAL MODES analysis to compute specific heats Juan José Galano Frutos
[gmx-users] NORMAL MODES analysis to compute specific heats Juan José Galano Frutos
[gmx-users] Restraining Protein-ligand distance Juan José Galano Frutos
[gmx-users] Restraining Protein-ligand distance Juan José Galano Frutos
[gmx-users] g_energy for comparing total energies of 2 similar systems #SUKRITI GUPTA#
[gmx-users] Peptide orientation in lipid bilayers Sanket Ghawali
[gmx-users] g(r) Sanket Ghawali
[gmx-users] g(r) Sanket Ghawali
[gmx-users] Using the md integrator for calculating free energy of solvation Dan Gil
[gmx-users] 100-quartz force field for GROMACS using CGenFF Ivan Gladich
[gmx-users] 100-quartz force field for GROMACS using CGenFF Ivan Gladich
[gmx-users] How to calculate the MSD of center of mass of molecules Zheng Gong
[gmx-users] Pdb2gmx Lamm Gro
[gmx-users] COEFFICIENT FOR LINEAR INTERACTION ENERGY IN PROTEIN LIGAND COMPLEX Neha Gupta
[gmx-users] HOW TO INSTALL G_MMPBSA IN WINDOWS 7, 64 BIT Neha Gupta
[gmx-users] COMMAND IN HBOND Neha Gupta
[gmx-users] COMMAND IN HBOND Neha Gupta
[gmx-users] COMMAND IN HBOND Neha Gupta
[gmx-users] MMPBSA analysis on GROMACS trajectory Neha Gupta
[gmx-users] QUERY IN GRO FILE Neha Gupta
[gmx-users] MMPBSA analysis on GROMACS trajectory Neha Gupta
[gmx-users] equilibration and production run Neha Gupta
[gmx-users] HYDROGEN BOND EXISTENCE MAP Neha Gupta
[gmx-users] mwa error in g_anaeig Shubhangi Gupta
[gmx-users] pdb2gmx fails on CHARMM36 terminal group Davit Hakobyan
[gmx-users] pdb2gmx fails on CHARMM36 terminal group Davit Hakobyan
[gmx-users] pdb2gmx fails on CHARMM36 terminal group Davit Hakobyan
[gmx-users] pdb2gmx fails on CHARMM36 terminal group Davit Hakobyan
[gmx-users] pdb2gmx fails on CHARMM36 terminal group Davit Hakobyan
[gmx-users] Box size problem Davit Hakobyan
[gmx-users] Gromacs - Radius of gyration João Henriques
[gmx-users] Gromacs - Radius of gyration João Henriques
[gmx-users] Running GROMACS on cluster Yasser Almeida Hernández
[gmx-users] Format for predefined positions insert-molecules Svetomir Hitov
[gmx-users] Lipid water simulation Sheikh Imamul Hossain
[gmx-users] core dumped during equilibration in gromacs ISHRAT JAHAN
[gmx-users] core dumped during equilibration in gromacs ISHRAT JAHAN
[gmx-users] core dumped during equilibration in gromacs ISHRAT JAHAN
[gmx-users] core dumped during equilibration in gromacs ISHRAT JAHAN
[gmx-users] analysis of osmolyte at particular distance from backbone ISHRAT JAHAN
[gmx-users] Polymer Simulations NIKHIL JOSHI
[gmx-users] Polymer Simulations NIKHIL JOSHI
[gmx-users] Polymer Simulations NIKHIL JOSHI
[gmx-users] Polymer Simulations NIKHIL JOSHI
[gmx-users] Protein preparation Quin K
[gmx-users] Protein preparation Quin K
[gmx-users] Protein preparation Quin K
[gmx-users] Velocity as a function of distance Z (Mark Abraham) Kamps, M.
[gmx-users] gromacs.org_gmx-users Digest, Vol 155, Issue 21 Kamps, M.
[gmx-users] Velocity as a function of distance Z Kamps, M.
[gmx-users] Meaning of columns in .xvg output file Kamps, M.
[gmx-users] Meaning of columns in .xvg output file Kamps, M.
[gmx-users] The spacing of the decimal points in file is not consistent Karchevskaya, Anastasia
[gmx-users] segmentation fault in gmx hbond Tasneem Kausar
[gmx-users] Error in free energy calculation Tasneem Kausar
[gmx-users] Error in free energy calculation Tasneem Kausar
[gmx-users] Pull code grompp error Tasneem Kausar
[gmx-users] COMMAND IN HBOND Tasneem Kausar
[gmx-users] Protein preparation Rasika Kelum
[gmx-users] rdf calculation with respect to center of mass Maryam Khalkhali
[gmx-users] topology Jakub Krajniak
[gmx-users] Question regarding coarse-graining martini Peter Kroon
[gmx-users] g_energy for comparing total energies of 2 similar systems Peter Kroon
[gmx-users] Lipid water simulation Peter Kroon
[gmx-users] performance issue with many short MD runs Peter Kroon
[gmx-users] Dihedral restraint in explicit water Anurag Kumar
[gmx-users] Computational electrophysiology, implicit solvent and coarse-grained system: atom/molecule definitions? Kutzner, Carsten
[gmx-users] g_membed or alternative on GROMACS 2016 Kutzner, Carsten
[gmx-users] HOW TO SPLIT RESIDUES Justin Lemkul
[gmx-users] Charmm topologies for DHF/NADPH Justin Lemkul
[gmx-users] PDB2GMX Fatal Error Justin Lemkul
[gmx-users] segmentation fault in gmx hbond Justin Lemkul
[gmx-users] pdb2gmx throws a fatal error for Carbon Monoxide Justin Lemkul
[gmx-users] Per lipid area for heterogeneous membrane Justin Lemkul
[gmx-users] The spacing of the decimal points in file is not consistent Justin Lemkul
[gmx-users] topology Justin Lemkul
[gmx-users] Per lipid area for heterogeneous membrane Justin Lemkul
[gmx-users] Per lipid area for heterogeneous membrane Justin Lemkul
[gmx-users] topology Justin Lemkul
[gmx-users] topology Justin Lemkul
[gmx-users] Fatal error: Atomtype CA not found Justin Lemkul
[gmx-users] topology Justin Lemkul
[gmx-users] topology Justin Lemkul
[gmx-users] pdb2gmx throws a fatal error for Carbon Monoxide Justin Lemkul
[gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff? Justin Lemkul
[gmx-users] Catenation and sampling Justin Lemkul
[gmx-users] Invalid Order for Directive Defaults Error Due to Force Field Mixing Justin Lemkul
[gmx-users] Distance between centers of mass Justin Lemkul
[gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff? Justin Lemkul
[gmx-users] Per lipid area for heterogeneous membrane Justin Lemkul
[gmx-users] Invalid Order for Directive Defaults Error Due to Force Field Mixing Justin Lemkul
[gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff? Justin Lemkul
[gmx-users] Distance between centers of mass Justin Lemkul
[gmx-users] Analyzing Desmond trajectories using GROMACS tools Justin Lemkul
[gmx-users] UMBRELLA SAMPLING Justin Lemkul
[gmx-users] membrane proteins simulation Justin Lemkul
[gmx-users] 100-quartz force field for GROMACS using CGenFF Justin Lemkul
[gmx-users] Meaning of columns in .xvg output file Justin Lemkul
[gmx-users] Analyzing Desmond trajectories using GROMACS tools Justin Lemkul
[gmx-users] fatal error Justin Lemkul
[gmx-users] Steepest Descents converged to machine precision in XX steps Justin Lemkul
[gmx-users] unusual GridMAT-MD tool result using gnuplot Justin Lemkul
[gmx-users] Steepest Descents converged to machine precision in XX steps Justin Lemkul
[gmx-users] User defined potentials with implicit solvent Justin Lemkul
[gmx-users] Polymer Simulations Justin Lemkul
[gmx-users] Calculating area per lipid and monolayer thickness Justin Lemkul
[gmx-users] Regarding Residue.. Justin Lemkul
[gmx-users] Calculating area per lipid and monolayer thickness Justin Lemkul
[gmx-users] Calculating area per lipid and monolayer thickness Justin Lemkul
[gmx-users] Question regarding lipid bilayer pore formation Justin Lemkul
[gmx-users] Regarding Residue.. Justin Lemkul
[gmx-users] Use of -nr for order parameters Justin Lemkul
[gmx-users] Question regarding rebuilding the simulation box Justin Lemkul
[gmx-users] Regarding Umbrella sampling Justin Lemkul
[gmx-users] Regarding Umbrella sampling Justin Lemkul
[gmx-users] I want to drag two atoms together with GROMCS SMD options. Justin Lemkul
[gmx-users] Use of -nr for order parameters Justin Lemkul
[gmx-users] g_hbond problems Justin Lemkul
[gmx-users] I want to drag two atoms together with GROMCS SMD options. Justin Lemkul
[gmx-users] Question regarding calculation of thickness using GridMAT-MD Justin Lemkul
[gmx-users] gmx density scripting? Justin Lemkul
[gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff? Justin Lemkul
[gmx-users] pdb2gmx generates very large .top for lipids with charmm36-nov2016.ff Justin Lemkul
[gmx-users] pdb2gmx fails on CHARMM36 terminal group Justin Lemkul
[gmx-users] Simulation queries Justin Lemkul
[gmx-users] lincs warning Justin Lemkul
[gmx-users] pdb2gmx fails on CHARMM36 terminal group Justin Lemkul
[gmx-users] PMF, Enthalpy, Entropy Justin Lemkul
[gmx-users] Simulation queries Justin Lemkul
[gmx-users] chainsep in pdb2gmx Justin Lemkul
[gmx-users] Polymer Simulations Justin Lemkul
[gmx-users] How to define cross-linking bonds Justin Lemkul
[gmx-users] POSRES for umbrella sampling Justin Lemkul
[gmx-users] Distance restraints on two TYR OH groups so that they are together Justin Lemkul
[gmx-users] Gromacs installation on GPU Justin Lemkul
[gmx-users] EM did not converge crashing drude system Justin Lemkul
[gmx-users] Box size problem Justin Lemkul
[gmx-users] Error in free energy calculation Justin Lemkul
[gmx-users] Peptide orientation in lipid bilayers Justin Lemkul
[gmx-users] Dihedral drivers and 2D Energy Plot in gromacs Justin Lemkul
[gmx-users] Running GROMACS on cluster Justin Lemkul
[gmx-users] Doubt from force constant calculations Justin Lemkul
[gmx-users] MDRUN doesn't print Hessian Matrix as ordered. Justin Lemkul
[gmx-users] MDRUN doesn't print Hessian Matrix as ordered Justin Lemkul
[gmx-users] protein-ligand complex mdrun errors Justin Lemkul
[gmx-users] (no subject) Justin Lemkul
[gmx-users] Dihedral restraint in explicit water Justin Lemkul
[gmx-users] MDRUN doesn't print Hessian Matrix as ordered Justin Lemkul
[gmx-users] Doubt from force constant calculations Justin Lemkul
[gmx-users] Pressure problem in EM simulation Justin Lemkul
[gmx-users] Pressure problem in EM simulation Justin Lemkul
[gmx-users] topology file construction Justin Lemkul
[gmx-users] Pressure in NPT simulation Justin Lemkul
[gmx-users] Pressure in NPT simulation Justin Lemkul
[gmx-users] Pressure and box volume Justin Lemkul
[gmx-users] Dihedral drivers and 2D Energy Plot in gromacs Justin Lemkul
[gmx-users] topology for charmm Justin Lemkul
[gmx-users] NORMAL MODES analysis to compute specific heats Justin Lemkul
[gmx-users] Index is larger than the number of atoms in the trajectory file Justin Lemkul
[gmx-users] Topology for charmm Justin Lemkul
[gmx-users] DSSP Justin Lemkul
[gmx-users] Structure blowing up after increased the temperature Justin Lemkul
[gmx-users] Water molecule starting at atom 39087 can not be settled Justin Lemkul
[gmx-users] Dihedral drivers and 2D Energy Plot in gromacs Justin Lemkul
[gmx-users] Water molecule starting at atom 39087 can not be settled Justin Lemkul
[gmx-users] Structure blowing up after increased the temperature Justin Lemkul
[gmx-users] Topology CHarmm Justin Lemkul
[gmx-users] Charmm (cgenff) Str file Justin Lemkul
[gmx-users] can anyone plx help me with the problem Listed nonbonded interaction between particles 112 and 120 at distance 3f which is larger than the table limit 3f nm. Justin Lemkul
[gmx-users] GPU computing for explicit solvation systems Justin Lemkul
[gmx-users] Regarding Glycine structure Justin Lemkul
[gmx-users] gmx bar histogram data Justin Lemkul
[gmx-users] Calculate area per head group Justin Lemkul
[gmx-users] Pull code grompp error Justin Lemkul
[gmx-users] Clarification for the meaning of ncoords in GROMACS 5.0.4 pull code Justin Lemkul
[gmx-users] Need for a clarification between "umbrella restraints" and value for "ncoords" in GROMACS pull code Justin Lemkul
[gmx-users] Secondary structure analysis Justin Lemkul
[gmx-users] Gromacs for polymer and biomolecule system Justin Lemkul
[gmx-users] Protein preparation Justin Lemkul
[gmx-users] calculation of self energy of protein Justin Lemkul
[gmx-users] Protein preparation Justin Lemkul
[gmx-users] Replica exchange: exchanging pressures Justin Lemkul
[gmx-users] calculation of self energy of protein Justin Lemkul
[gmx-users] Using the md integrator for calculating free energy of solvation Justin Lemkul
[gmx-users] calculation of self energy of protein Justin Lemkul
[gmx-users] Protein preparation Justin Lemkul
[gmx-users] Secondary structure analysis Justin Lemkul
[gmx-users] forcefield installation on GROMACS 5.1.4 Justin Lemkul
[gmx-users] Restraining Protein-ligand distance Justin Lemkul
[gmx-users] Regarding Glycine structure Justin Lemkul
[gmx-users] Extracting Energy of Individual Molecules From Energy File Justin Lemkul
[gmx-users] Unbiased or biased Justin Lemkul
[gmx-users] topology Justin Lemkul
[gmx-users] Is My NPT Density High? Justin Lemkul
[gmx-users] Regarding Glycine structure Justin Lemkul
[gmx-users] protein-ligand Justin Lemkul
[gmx-users] Help in a thermalization Justin Lemkul
[gmx-users] Help in a thermalization Justin Lemkul
[gmx-users] Help in a thermalization Justin Lemkul
[gmx-users] Regarding Glycine structure Justin Lemkul
[gmx-users] protein-ligand Justin Lemkul
[gmx-users] topology Justin Lemkul
[gmx-users] forcefield installation on GROMACS 5.1.4 Justin Lemkul
[gmx-users] Bond energy difference between CHARMM and GROMACS Justin Lemkul
[gmx-users] MD for inorganic compound Justin Lemkul
[gmx-users] dihedral restrains fail in free energy calculation Justin Lemkul
[gmx-users] protein-ligand Justin Lemkul
[gmx-users] About msd and lateral diffussion command Justin Lemkul
[gmx-users] Replica Exchange for surface tension Justin Lemkul
[gmx-users] Replica Exchange for surface tension Justin Lemkul
[gmx-users] potential energy of a system Justin Lemkul
[gmx-users] Replica Exchange for surface tension Justin Lemkul
[gmx-users] Replica Exchange for surface tension Justin Lemkul
[gmx-users] Replica Exchange for surface tension Justin Lemkul
[gmx-users] mdrun error Justin Lemkul
[gmx-users] Format for predefined positions insert-molecules Justin Lemkul
[gmx-users] Box dimensions in the gro file are not read by GROMACS Justin Lemkul
[gmx-users] terminated abnormally, message of GridMAT-MD tool Justin Lemkul
[gmx-users] Protein preparation Justin Lemkul
[gmx-users] FAD parameters in CHRAMm36 ff Justin Lemkul
[gmx-users] Replica Exchange for surface tension Justin Lemkul
[gmx-users] gmx xpm2ps Justin Lemkul
[gmx-users] pdb2gmx throws a fatal error for Carbon Monoxide Acqualine Lobo
[gmx-users] pdb2gmx throws a fatal error for Carbon Monoxide Acqualine Lobo
[gmx-users] pdb2gmx throws a fatal error for Carbon Monoxide Acqualine Lobo
[gmx-users] Simulation queries Acqualine Lobo
[gmx-users] Simulation queries Acqualine Lobo
[gmx-users] Error in free energy calculation Hannes Loeffler
[gmx-users] Error in free energy calculation Hannes Loeffler
[gmx-users] query about structural consistency Hannes Loeffler
[gmx-users] COMMAND IN HBOND Erik Marklund
[gmx-users] solvate with hexagonal box Erik Marklund
[gmx-users] solvate with hexagonal box Erik Marklund
[gmx-users] Bond energy difference between CHARMM and GROMACS Erik Marklund
[gmx-users] solvate with hexagonal box Erik Marklund
[gmx-users] vsites with CHARMM force fields Erik Marklund
[gmx-users] Steepest Descents converged to machine precision in XX steps Nikhil Maroli
[gmx-users] Steepest Descents converged to machine precision in XX steps Nikhil Maroli
[gmx-users] Workstation Nikhil Maroli
[gmx-users] COMMAND TO DISPLAY SIMULATION COMPLETION TIME Nikhil Maroli
[gmx-users] membed software inconsistency error Jason Mast
[gmx-users] Calculating area per lipid and monolayer thickness Merril Mathew
[gmx-users] Calculating area per lipid and monolayer thickness Merril Mathew
[gmx-users] Calculating area per lipid and monolayer thickness Merril Mathew
[gmx-users] Order parameter for double bonded lipids Merril Mathew
[gmx-users] Order parameter for double bonded lipids Merril Mathew
[gmx-users] Order parameter for double bonded lipids Merril Mathew
[gmx-users] Order parameter for double bonded lipids Merril Mathew
[gmx-users] Order parameter for double bonded lipids Merril Mathew
[gmx-users] Calculating area per lipid and monolayer thickness Merril Mathew
[gmx-users] Order parameter for double bonded lipids Merril Mathew
[gmx-users] Order parameter for double bonded lipids Merril Mathew
[gmx-users] Lipid head movement normal to monolayer. Merril Mathew
[gmx-users] Lipid head movement normal to monolayer. Merril Mathew
[gmx-users] Surface tension/pressure calculation Merril Mathew
[gmx-users] gmx energy: error estimate? Andreas Mecklenfeld
[gmx-users] Steepest Descents converged to machine precision in XX steps Felipe Merino
[gmx-users] topology file construction abhisek Mondal
[gmx-users] topology file construction abhisek Mondal
[gmx-users] query about structural consistency abhisek Mondal
[gmx-users] query about structural consistency abhisek Mondal
[gmx-users] query about structural consistency abhisek Mondal
[gmx-users] sum of the two largest charge group radii is larger than rlist abhisek Mondal
[gmx-users] sum of the two largest charge group radii is larger than rlist abhisek Mondal
[gmx-users] sum of the two largest charge group radii is larger than rlist abhisek Mondal
[gmx-users] MD for inorganic compound André Farias de Moura
[gmx-users] How to define cross-linking bonds Jon Mujika
[gmx-users] calculation of self energy of protein Saumyak Mukherjee
[gmx-users] calculation of self energy of protein Saumyak Mukherjee
[gmx-users] calculation of self energy of protein Saumyak Mukherjee
[gmx-users] calculation of self energy of protein Saumyak Mukherjee
[gmx-users] calculation of self energy of protein Saumyak Mukherjee
[gmx-users] potential energy of a system Saumyak Mukherjee
[gmx-users] potential energy of a system Saumyak Mukherjee
[gmx-users] Pdb2gmx Saumyak Mukherjee
[gmx-users] Regarding residue ... Dilip H N
[gmx-users] Regarding Residue.. Dilip H N
[gmx-users] Regarding Residue.. Dilip H N
[gmx-users] Regarding Radial Distribution Functions Dilip H N
[gmx-users] Regarding Radial Distribution Functions Dilip H N
[gmx-users] Regarding Radial Distribution Functions Dilip H N
[gmx-users] Regarding Radial Distribution Functions Dilip H N
[gmx-users] Regarding extending simulations Dilip H N
[gmx-users] Regarding trajectories Dilip H N
[gmx-users] Regarding RDF, Trajectories Dilip H N
[gmx-users] Regarding Glycine structure Dilip H N
[gmx-users] Regarding Glycine structure Dilip H N
[gmx-users] (no subject) Dilip H N
[gmx-users] Regarding structure Dilip H N
[gmx-users] Regarding structure Dilip H N
[gmx-users] Regarding Glycine structure Dilip H N
[gmx-users] Regarding Glycine structure Dilip H N
[gmx-users] Regarding Glycine structure Dilip H N
[gmx-users] Problem to create topology using Amber force fields for single zitterionic amino acids. Qaisrani Muhammad Nawaz
[gmx-users] importance of nvlink in GPU nodes? Christopher Neale
[gmx-users] importance of nvlink in GPU nodes? Christopher Neale
[gmx-users] Extracting Energy of Individual Molecules From Energy File Kelechi Okoroafor
[gmx-users] Extracting Energy of Individual Molecules From Energy File Kelechi Okoroafor
[gmx-users] Pressure problem in EM simulation Mishelle Oña
[gmx-users] Pressure problem in EM simulation Mishelle Oña
[gmx-users] Pressure in NPT simulation Mishelle Oña
[gmx-users] Pressure in NPT simulation Mishelle Oña
[gmx-users] Pressure and box volume Mishelle Oña
[gmx-users] Pressure and box volume Mishelle Oña
[gmx-users] Doubt from force constant calculations Rakesh Pant
[gmx-users] Doubt from force constant calculations Rakesh Pant
[gmx-users] Get a correct .pdb for a synthetic peptide Sotirios Dionysios I. Papadatos
[gmx-users] membrane proteins simulation Negar Parvizi
[gmx-users] MD for inorganic compound Anjali Patel
[gmx-users] NPT equilibration without pbc Rajorshi Paul
[gmx-users] NPT equilibration without pbc Rajorshi Paul
[gmx-users] NPT equilibration without pbc Rajorshi Paul
[gmx-users] NPT equilibration without pbc Rajorshi Paul
[gmx-users] Clarification for the meaning of ncoords in GROMACS 5.0.4 pull code Sajeewa Pemasinghe
[gmx-users] Need for a clarification between "umbrella restraints" and value for "ncoords" in GROMACS pull code Sajeewa Pemasinghe
[gmx-users] Need for a clarification between "umbrella restraints" and value for "ncoords" in GROMACS pull code Sajeewa Pemasinghe
[gmx-users] Clarification for the meaning of ncoords in GROMACS 5.0.4 pull code Sajeewa Pemasinghe
[gmx-users] PMF - US histograms problem Sajeewa Pemasinghe
[gmx-users] Box dimensions in the gro file are not read by GROMACS Sajeewa Pemasinghe
[gmx-users] Box dimensions in the gro file are not read by GROMACS (correcting an error in the previous question) Sajeewa Pemasinghe
[gmx-users] Box dimensions in the gro file are not read by GROMACS Sajeewa Pemasinghe
[gmx-users] Box dimensions in the gro file are not read by GROMACS Sajeewa Pemasinghe
[gmx-users] Box dimensions in the gro file are not read by GROMACS Sajeewa Pemasinghe
[gmx-users] Box dimensions in the gro file are not read by GROMACS Sajeewa Pemasinghe
[gmx-users] 1-4 VDW and 1-4 EEL Energy Components in mm-gbsa Atila Petrosian
[gmx-users] Order parameter for double bonded lipids Thomas Piggot
[gmx-users] Order parameter for double bonded lipids Thomas Piggot
[gmx-users] Order parameter for double bonded lipids Thomas Piggot
[gmx-users] Order parameter for double bonded lipids Thomas Piggot
[gmx-users] Get a correct .pdb for a synthetic peptide Tomasz Piskorz
[gmx-users] Updating/upgrading GROMACS Gregory Poon
[gmx-users] Updating/upgrading GROMACS Gregory Poon
[gmx-users] Fatal error: Atomtype CA not found Puneet
[gmx-users] Gromacs with Plumed Szilárd Páll
[gmx-users] Updating/upgrading GROMACS Szilárd Páll
[gmx-users] Gromacs with Plumed Szilárd Páll
[gmx-users] Gromacs with Plumed Szilárd Páll
[gmx-users] Performance advice for newest Pascal architecture Szilárd Páll
[gmx-users] Performance advice for newest Pascal architecture Szilárd Páll
[gmx-users] importance of nvlink in GPU nodes? Szilárd Páll
[gmx-users] COMMAND TO DISPLAY SIMULATION COMPLETION TIME Kulkarni R
[gmx-users] COMMAND TO DISPLAY SIMULATION COMPLETION TIME Kulkarni R
[gmx-users] LINEAR INTERACTION ENERGY Kulkarni R
[gmx-users] LINEAR INTERACTION ENERGY Kulkarni R
[gmx-users] g_mmpbsa Kulkarni R
[gmx-users] gmx xpm2ps Kulkarni R
[gmx-users] gmx xpm2ps Kulkarni R
[gmx-users] gmx xpm2ps Kulkarni R
[gmx-users] NVE run Neda Rafiee
[gmx-users] NVE run Neda Rafiee
[gmx-users] Invalid Order for Directive Defaults Error Due to Force Field Mixing Sanim Rahman
[gmx-users] (no subject) Sanim Rahman
[gmx-users] (no subject) Sanim Rahman
[gmx-users] (no subject) Sanim Rahman
[gmx-users] Workstation Suneth Rajapaksha
[gmx-users] Workstation Suneth Rajapaksha
[gmx-users] I want to drag two atoms together with GROMCS SMD options. Vytautas Rakeviius
[gmx-users] I want to drag two atoms together with GROMCS SMD options. Vytautas Rakeviius
[gmx-users] Distance restraints on two TYR OH groups so that they are together Vytautas Rakeviius
[gmx-users] Distance restraints on two TYR OH groups so that they are together Vytautas Rakeviius
[gmx-users] Error in free energy calculation Vytautas Rakeviius
[gmx-users] LINEAR INTERACTION ENERGY Vytautas Rakeviius
[gmx-users] LINEAR INTERACTION ENERGY Vytautas Rakeviius
[gmx-users] Error in free energy calculation Vytautas Rakeviius
[gmx-users] Error in free energy calculation Vytautas Rakeviius
[gmx-users] COEFFICIENT FOR LINEAR INTERACTION ENERGY IN PROTEIN LIGAND COMPLEX Vytautas Rakeviius
[gmx-users] g_membed or alternative on GROMACS 2016 Vytautas Rakeviius
[gmx-users] Regarding structure Vytautas Rakeviius
[gmx-users] Pull Code constant value Vytautas Rakeviius
[gmx-users] FAD parameters in CHRAMm36 ff Vytautas Rakeviius
[gmx-users] per residue RMSF calculation - reg Vigneshwar Ramakrishnan
[gmx-users] Gromac4.6.7 installation problem Mohsen Ramezanpour
[gmx-users] Gromac4.6.7 installation problem Mohsen Ramezanpour
[gmx-users] Problem with combining the .edr files Mohsen Ramezanpour
[gmx-users] Problem with combining the .edr files Mohsen Ramezanpour
[gmx-users] Gromacs for polymer and biomolecule system Riya Rogers
[gmx-users] Gromacs for polymer and biomolecule system Riya Rogers
[gmx-users] Get a correct .pdb for a synthetic peptide FL S
[gmx-users] Get a correct .pdb for a synthetic peptide FL S
[gmx-users] topology RAHUL SURESH
[gmx-users] topology RAHUL SURESH
[gmx-users] topology RAHUL SURESH
[gmx-users] topology RAHUL SURESH
[gmx-users] topology RAHUL SURESH
[gmx-users] topology RAHUL SURESH
[gmx-users] topology for charmm RAHUL SURESH
[gmx-users] Topology for charmm RAHUL SURESH
[gmx-users] Topology CHarmm RAHUL SURESH
[gmx-users] Charmm (cgenff) Str file RAHUL SURESH
[gmx-users] Secondary structure analysis RAHUL SURESH
[gmx-users] Secondary structure analysis RAHUL SURESH
[gmx-users] topology RAHUL SURESH
[gmx-users] protein-ligand RAHUL SURESH
[gmx-users] protein-ligand RAHUL SURESH
[gmx-users] topology RAHUL SURESH
[gmx-users] protein-ligand RAHUL SURESH
[gmx-users] protein-ligand RAHUL SURESH
[gmx-users] Ligand topology RAHUL SURESH
[gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff? Jonathan Saboury
[gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff? Jonathan Saboury
[gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff? Jonathan Saboury
[gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff? Jonathan Saboury
[gmx-users] pdb2gmx generates very large .top for lipids with charmm36-nov2016.ff Jonathan Saboury
[gmx-users] CGenFF generated prm/itp overriding and messing with charmm36-nov2016.ff? Jonathan Saboury
[gmx-users] pdb2gmx generates very large .top for lipids with charmm36-nov2016.ff Jonathan Saboury
[gmx-users] pdb2gmx generates very large .top for lipids with charmm36-nov2016.ff Jonathan Saboury
[gmx-users] Regarding structure Jonathan Saboury
[gmx-users] Is My NPT Density High? Jonathan Saboury
[gmx-users] Gromacs with Plumed Åke Sandgren
[gmx-users] Simulation queries Catarina A. Carvalheda dos Santos
[gmx-users] Lipid head movement normal to monolayer. Catarina A. Carvalheda dos Santos
[gmx-users] Lipid head movement normal to monolayer. Catarina A. Carvalheda dos Santos
[gmx-users] Getting charges of the system out of the simulation in human-readable form Marko Sever
[gmx-users] Analysis pull code simulation data to obtain Strain Stress curve Md. Imrul Reza Shishir
[gmx-users] Analysis pull code simulation data to obtain Strain Stress curve Md. Imrul Reza Shishir
[gmx-users] Regarding trajectories Marlon Sidore
[gmx-users] Replica exchange: exchanging pressures Ramon Crehuet Simon
[gmx-users] vsites with CHARMM force fields Ramon Crehuet Simon
[gmx-users] gmx bar histogram data Eric Smoll
[gmx-users] Per lipid area for heterogeneous membrane Björn Sommer
[gmx-users] Makeing movies using VMD Andrea Spitaleri
[gmx-users] Cohesive Energy Density (CED) Calculation in Gromacs simulations David van der Spoel
[gmx-users] segmentation fault in gmx hbond David van der Spoel
[gmx-users] Analyzing Desmond trajectories using GROMACS tools David van der Spoel
[gmx-users] PMF, Enthalpy, Entropy David van der Spoel
[gmx-users] Bond energy difference between CHARMM and GROMACS David van der Spoel
[gmx-users] QUERY IN GRO FILE Peter Stern
[gmx-users] User defined potentials with implicit solvent John Stoppelman
[gmx-users] Performance advice for newest Pascal architecture Téletchéa Stéphane
[gmx-users] Order parameter for double bonded lipids Piggot T.
[gmx-users] Cohesive Energy Density (CED) Calculation in Gromacs simulations ZUO Taisen
[gmx-users] Dummy atom in OPLS acetonitrile Thompson, Matthew White
[gmx-users] linking error while trying to build gromacs Andrey Tolstov
[gmx-users] fatal error Urszula Uciechowska
[gmx-users] fatal error Urszula Uciechowska
[gmx-users] chainsep in pdb2gmx Urszula Uciechowska
[gmx-users] gmx xpm2ps Diogo Vila Viçosa
[gmx-users] Computational electrophysiology, implicit solvent and coarse-grained system: atom/molecule definitions? Vries, de, H.W.
[gmx-users] protein-ligand complex mdrun errors Vignesh Waran
[gmx-users] protein-ligand complex mdrun errors Vignesh Waran
[gmx-users] protein-ligand complex mdrun errors Vignesh Waran
[gmx-users] Gromacs - Radius of gyration Mariusz Wierzbowski
[gmx-users] Bond energy difference between CHARMM and GROMACS Yvon Wong
[gmx-users] mdp options for REMD YanhuaOuyang
[gmx-users] mdp options for REMD YanhuaOuyang
[gmx-users] RDF calculation Farrokh Yousefi
[gmx-users] dihedral restrains fail in free energy calculation Ahmet Yıldırım
[gmx-users] Makeing movies using VMD Poncho Arvayo Zatarain
[gmx-users] Area per lipid through the time lipid membranes and mixed membranes Poncho Arvayo Zatarain
[gmx-users] area per headgroup over the course of simulation Poncho Arvayo Zatarain
[gmx-users] Calculate area per head group Poncho Arvayo Zatarain
[gmx-users] About msd and lateral diffussion command Poncho Arvayo Zatarain
[gmx-users] converting with trjconv Oleksii Zdorevskyi
[gmx-users] converting with trjconv Oleksii Zdorevskyi
[gmx-users] Free energy calculations Amir Zeb
[gmx-users] Invalid Order for Directive Defaults Error Due to Force Field Mixing Amir Zeb
[gmx-users] Invalid Order for Directive Defaults Error Due to Force Field Mixing Amir Zeb
[gmx-users] Regarding Umbrella sampling Amir Zeb
[gmx-users] Regarding Umbrella sampling Amir Zeb
[gmx-users] Regarding Umbrella sampling Amir Zeb
[gmx-users] Error in free energy calculation Amir Zeb
[gmx-users] How to access recent discussion on gmx-user list? Amir Zeb
[gmx-users] How to access recent discussion on gmx-user list? Amir Zeb
[gmx-users] FAD parameters in CHRAMm36 ff Amir Zeb
[gmx-users] FAD parameters in CHRAMm36 ff Amir Zeb
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] calculating gbsa parameters for metal ion Javaria ashraf
[gmx-users] mdrun error amitbehra at chemeng.iisc.ernet.in
[gmx-users] QUERY IN GRO FILE amitbehra at chemeng.iisc.ernet.in
[gmx-users] mindist in gromacs gozde ergin
[gmx-users] Replica Exchange for surface tension gozde ergin
[gmx-users] Replica Exchange for surface tension gozde ergin
[gmx-users] Replica Exchange for surface tension gozde ergin
[gmx-users] Replica Exchange for surface tension gozde ergin
[gmx-users] Replica Exchange for surface tension gozde ergin
[gmx-users] Replica Exchange for surface tension gozde ergin
[gmx-users] Replica Exchange for surface tension gozde ergin
[gmx-users] need help ! electronsource at free.fr
[gmx-users] need help ! electronsource at free.fr
[gmx-users] need help ! electronsource at free.fr
[gmx-users] error while writing an xtc file electronsource at free.fr
[gmx-users] Unbiased or biased m g
[gmx-users] Fwd: How to calculate Hydrophobic and Hydrophilic SASA separately in latest version of gromacs? spss4 at iacs.res.in
[gmx-users] Fwd: How to calculate Hydrophobic and Hydrophilic SASA separately in latest version of gromacs? spss4 at iacs.res.in
[gmx-users] Fwd: How to calculate Hydrophobic and Hydrophilic SASA separately in latest version of gromacs? spss4 at iacs.res.in
[gmx-users] Simulation crashes: issue with [pair] potential poma at ifpan.edu.pl
[gmx-users] Simulation crashes: issue with [pair] potential poma at ifpan.edu.pl
[gmx-users] MMPBSA analysis on GROMACS trajectory masoud keramati
[gmx-users] Water molecule starting at atom 39087 can not be settled liming_52
[gmx-users] Water molecule starting at atom 39087 can not be settled liming_52
[gmx-users] Gromacs and Radeon Nano melichercik at nh.cas.cz
[gmx-users] rotation while pulling gromacs query
[gmx-users] lincs warnin threshold fatemeh ramezani
[gmx-users] Fw: lincs warnin threshold fatemeh ramezani
[gmx-users] lincs warning fatemeh ramezani
[gmx-users] lincs warning fatemeh ramezani
[gmx-users] To invoke GPU in gromacs version 4.6.4 vinshal shalini
[gmx-users] Catenation and sampling suniba shuaib
[gmx-users] Per lipid area for heterogeneous membrane shweta singh
[gmx-users] domain decomposition Error shweta singh
[gmx-users] GPU computing for explicit solvation systems mina solhtalab
[gmx-users] POSRES for umbrella sampling stellatof
[gmx-users] Question regarding rebuilding the simulation box ali.khourshaei71 at student.sharif.edu
[gmx-users] Question regarding rebuilding the simulation box ali.khourshaei71 at student.sharif.edu
[gmx-users] Question regarding lipid bilayer pore formation ali.khourshaei71 at student.sharif.edu
[gmx-users] Question regarding rebuilding the simulation box ali.khourshaei71 at student.sharif.edu
[gmx-users] Question regarding calculation of thickness using GridMAT-MD ali.khourshaei71 at student.sharif.edu
[gmx-users] g_hbond problems andrea.correa at unina.it
[gmx-users] linking error while trying to build gromacs Толстов Андрей
[gmx-users] linking error while trying to build gromacs Толстов Андрей
[gmx-users] Per lipid area for heterogeneous membrane Мижээ Батсайхан
[gmx-users] Per lipid area for heterogeneous membrane Мижээ Батсайхан
[gmx-users] Per lipid area for heterogeneous membrane Мижээ Батсайхан
[gmx-users] Per lipid area for heterogeneous membrane Мижээ Батсайхан
[gmx-users] unusual GridMAT-MD tool result using gnuplot Мижээ Батсайхан
[gmx-users] Fwd: unusual GridMAT-MD tool result using gnuplot Мижээ Батсайхан
[gmx-users] terminated abnormally, message of GridMAT-MD tool Мижээ Батсайхан

Last message date: Fri Mar 31 19:11:15 CEST 2017
Archived on: Fri Mar 31 19:11:17 CEST 2017

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