[gmx-users] domain decomposition Error

[Mark Abraham]

Hi,

There's good advice for this problem at think link that was suggested in
the error message: http://www.gromacs.org/Documentation/Errors. Probably
your box volume or NpT protocol need some attention.

Mark

On Tue, 7 Mar 2017 06:23 shweta singh <shwetaasingh7 at gmail.com> wrote:

> Thank you !
>
> On Tue, Mar 7, 2017 at 9:47 AM, MRINAL ARANDHARA <
> arandharamrinal at iitkgp.ac.in> wrote:
>
> > I am trying to run a lipid bilayer simulation but during the npt
> > equillibration step I am getting the following error
> > "1 particles communicated to PME rank 6 are more than 2/3 times the
> > cut-off out of the domain decomposition cell of their charge group in
> > dimension y"
> > I have successfully run the NVT equillibration.What may be the  problem??
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>
> --
>
> --Thanks and Regards--
>
> Shweta Kumari
> M.Sc. Bioinformatics
> Central University Of South Bihar, Patna
>
> Project Assistant
> Computational Structural Biology lab
> CSIR-Institute of Genomics and Integrative Biology
> Mathura Road, Sukhdev Vihar
> New Delhi 110025
> India
>
> E-mail Id : shwetaasingh7 at gmail.com
> Alternate e-mail id :  shweta.kumari at igib.in / shwetabis at cub.ac.in
> Mobile No. 8409033301
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