[gmx-users] unusual GridMAT-MD tool result using gnuplot

Justin Lemkul jalemkul at vt.edu
Tue Mar 7 13:47:46 CET 2017

On 3/6/17 11:47 PM, Мижээ Батсайхан wrote:
> Dear gmx users,
> I used the GridMAM-MD tool (v2) for the membrane thickness. After the
> gridmat-md, I used gnuplot for visualization. But there is no surface
> figure, there are bar code like lines. How can I fix these error?
>>  thickness.bmp
> <https://drive.google.com/file/d/0Bxy0TEohsbBVZ0RNbVBTdEJiU28/view?usp=drive_web>
Looks like you just plotted the matrix incorrectly.  But this is not a GROMACS 
issue so please contact me if you need help.  I'll need all of your input and 
output files, as well as your plotting script to be able to see what's going on.



Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441


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