[gmx-users] Secondary structure analysis

RAHUL SURESH drrahulsuresh at gmail.com
Mon Mar 27 12:48:31 CEST 2017


i found a lot libraries missing in dssp.

can i obtain them using
*rsync -avz rsync://rsync.cmbi.ru.nl/dssp/ <http://rsync.cmbi.ru.nl/dssp/>
/home/oem/Downloads/dssp*

On Sun, Mar 26, 2017 at 9:44 PM, Souparno Adhikary <souparnoa91 at gmail.com>
wrote:

> I think dssp is a useful tool for this purpose...
>
> Souparno
>
> On 26 Mar 2017 19:50, "Justin Lemkul" <jalemkul at vt.edu> wrote:
>
> >
> >
> > On 3/26/17 8:21 AM, RAHUL SURESH wrote:
> >
> >> I use gromacs 2016.1 version. How to do secondary structure analysis ?
> >>
> >>
> > http://manual.gromacs.org/documentation/2016.1/user-guide/
> > cmdline.html#protein-specific-analysis
> >
> > -Justin
> >
> > --
> > ==================================================
> >
> > Justin A. Lemkul, Ph.D.
> > Ruth L. Kirschstein NRSA Postdoctoral Fellow
> >
> > Department of Pharmaceutical Sciences
> > School of Pharmacy
> > Health Sciences Facility II, Room 629
> > University of Maryland, Baltimore
> > 20 Penn St.
> > Baltimore, MD 21201
> >
> > jalemkul at outerbanks.umaryland.edu | (410) 706-7441
> > http://mackerell.umaryland.edu/~jalemkul
> >
> > ==================================================
> > --
> > Gromacs Users mailing list
> >
> > * Please search the archive at http://www.gromacs.org/Support
> > /Mailing_Lists/GMX-Users_List before posting!
> >
> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >
> > * For (un)subscribe requests visit
> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> > send a mail to gmx-users-request at gromacs.org.
> >
> --
> Gromacs Users mailing list
>
> * Please search the archive at http://www.gromacs.org/
> Support/Mailing_Lists/GMX-Users_List before posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>



-- 
*Regards,*
*Rahul Suresh*
*Research Scholar*
*Bharathiar University*
*Coimbatore*


More information about the gromacs.org_gmx-users mailing list