[gmx-users] gmx xpm2ps

Justin Lemkul jalemkul at vt.edu
Fri Mar 31 18:53:04 CEST 2017



On 3/31/17 11:27 AM, Kulkarni R wrote:
> Hi gromacs users,
>
>
> After completing production run, I gave this command
>
>
> gmx xpm2ps -f hbmap.xpm - o hbplot.eps -rainbow red
>
>
> However, I got error,
>
>
> -------------------------------------------------------
> Program:     gmx xpm2ps, VERSION 5.1.1
> Source file: src/gromacs/commandline/cmdlineparser.cpp (line 234)
> Function:    void gmx::CommandLineParser::parse(int*, char**)
>
> Error in user input:
> Invalid command-line options
>   In command-line option -f
>     File '-' does not exist or is not accessible.
>     The following extensions were tried to complete the file name:
>       .xpm
>   In command-line option -f
>     File 'o' does not exist or is not accessible.
>     The following extensions were tried to complete the file name:
>       .xpm
>   In command-line option -f
>     File name 'hbplot.eps' cannot be used for this option.
>     Only the following extensions are possible:
>       .xpm
>
>
> How to avoid this error?
>

Don't put a space between - and o in trying to specify the output file, 
otherwise you get this incorrect parsing of the command.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

==================================================


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