[gmx-users] Center to center distance in cylindrical micelles

[Shan Jayasinghe]

Hi,

I'm sorry for not providing the detail description of my system. Actually
it is a hexagonal phase. Therefore, four cylindrical micelles can be seen
in a cell. I want to calculate the center to center distance of two
cylindrical micelles.

On Sat, Aug 11, 2018 at 8:35 PM Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi,
>
> There is an axis of each cylinder but the two won't be parallel so there is
> no unique distance to measure. So I suggest thinking carefully about what
> you really want.
>
> Mark
>
> On Sat, Aug 11, 2018, 06:58 Shan Jayasinghe <shanjayasinghe2011 at gmail.com>
> wrote:
>
> > Hi,
> >
> > I tried to used gmx distance. However, I don't understand how can I
> define
> > the center of the circle face of the cylinder to the same in the other
> > cylindrical micelle.
> >
> > Can anyone help me?
> > Thank you.
> >
> >
> > On Sat, Aug 11, 2018 at 9:33 AM Mark Abraham <mark.j.abraham at gmail.com>
> > wrote:
> >
> > > Hi,
> > >
> > > Have you looked at the different tools available and considered what
> > might
> > > be useful for you?
> > >
> > > Mark
> > >
> > > On Fri, Aug 10, 2018, 07:34 Shan Jayasinghe <
> > shanjayasinghe2011 at gmail.com>
> > > wrote:
> > >
> > > > Dear Gromacs Users,
> > > >
> > > > I want to calculate the center to center distance of two cylindrical
> > > > micelles in my simulation. What gmx command should I use to calculate
> > the
> > > > distance? Can anyone help me?
> > > >
> > > > Thank you.
> > > > --
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> > --
> > Best Regards
> > Shan Jayasinghe
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-- 
Best Regards
Shan Jayasinghe