August 2018 Archives by thread

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...

Starting: Wed Aug 1 01:38:45 CEST 2018
Ending: Fri Aug 31 23:28:22 CEST 2018
Messages: 387

• [gmx-users] zig-zag stacking   Dan Gil
  • [gmx-users] zig-zag stacking   Lakshman Ji Verma
• [gmx-users] ndx file with frames   Dan Gil
• [gmx-users] non-global thermostatting   Alex
• [gmx-users] Issue with regression test.   Raymond Arter
  • [gmx-users] Issue with regression test.   Szilárd Páll
• [gmx-users] Problem with Rescaling of the COM   kai.exner at alumni.uni-ulm.de
• [gmx-users] zig-zag stacking   Nagasree Garapati
  • [gmx-users] zig-zag stacking   Lakshman Ji Verma
• [gmx-users] ?==?utf-8?q? segmentation fault (core?=?==?utf-8?q? dumped) error with gmx confrm   Jahn Nitschke
• [gmx-users] Rigid methane molecule using virtual sites (4fdn) construction   Ubaya Higgoda
• [gmx-users] question about the center of mass motion removal   madisonw at zju.edu.cn
  • [gmx-users] question about the center of mass motion removal   Justin Lemkul
• [gmx-users] My Email   Marcelo Molinatti Semprún
• [gmx-users] topology for bilayer graphene oxide   RAHUL SURESH
  • [gmx-users] topology for bilayer graphene oxide   Alex
• [gmx-users] Inconsistency in user input:   Atila Petrosian
• [gmx-users] Inconsistency in user input:   Atila Petrosian
  • [gmx-users] Inconsistency in user input:   Mark Abraham
    • [gmx-users] topogen usage   paul buscemi
      • [gmx-users] topogen usage   Justin Lemkul
• [gmx-users] Simulating crystal structures   Momin Ahmad
  • [gmx-users] Simulating crystal structures   Dallas Warren
  • [gmx-users] Simulating crystal structures   Lakshman Ji Verma
• [gmx-users] Molecules in micelles   Anjana Jayasinghe
• [gmx-users] constant pressure in NPT simulation   Lucia Mydlova
  • [gmx-users] constant pressure in NPT simulation   Paul bauer
  • [gmx-users] constant pressure in NPT simulation   Alex
  • [gmx-users] constant pressure in NPT simulation   Quyen V. Vu
    • [gmx-users] constant pressure in NPT simulation   Justin Lemkul
  • [gmx-users] constant pressure in NPT simulation   Lucia Mydlova
    • [gmx-users] constant pressure in NPT simulation   Alex
    • [gmx-users] constant pressure in NPT simulation   Justin Lemkul
      • [gmx-users] constant pressure in NPT simulation   Alex
• [gmx-users] Question about water insertion   G R
  • [gmx-users] Question about water insertion   Kevin Boyd
• [gmx-users] GROMACS Installation error on domdec.cpp   郭聪
  • [gmx-users] GROMACS Installation error on domdec.cpp   Benson Muite
• [gmx-users] mdrun stopped without error   Atila Petrosian
  • [gmx-users] mdrun stopped without error   RAHUL SURESH
  • [gmx-users] mdrun stopped without error   Mark Abraham
    • [gmx-users] mdrun stopped without error   Alex
      • [gmx-users] mdrun stopped without error   Mark Abraham
• [gmx-users] Qmmm   rose rahmani
• [gmx-users] Calculation for number of ions   Archana Sonawani-Jagtap
  • [gmx-users] Calculation for number of ions   Justin Lemkul
  • [gmx-users] Calculation for number of ions   Abhishek Acharya
• [gmx-users] GPU performance   RAHUL SURESH
  • [gmx-users] GPU performance   Justin Lemkul
• [gmx-users] Gromacs installation to do coupled QMMM with Gaussian   Maryam Kowsar
• [gmx-users] Qmmm (rose rahmani)   Groenhof, Gerrit
  • [gmx-users] Qmmm (rose rahmani)   rose rahmani
• [gmx-users] gmx helix error reg.   Vishwambhar Bhandare
• [gmx-users] msd   Eric Smoll
• [gmx-users] Gromacs installation to do coupled QMMM with Gaussian (Maryam Kowsar)   Groenhof, Gerrit
• [gmx-users] Qmmm (rose rahmani)   Groenhof, Gerrit
  • [gmx-users] Qmmm (rose rahmani)   Rose
• [gmx-users] Qmmm (rose rahmani) (Rose)   Groenhof, Gerrit
  • [gmx-users] Qmmm (rose rahmani) (Rose)   rose rahmani
• [gmx-users] umbrella pulling, pullx vs gmx distance   Joe Wu
  • [gmx-users] umbrella pulling, pullx vs gmx distance   Joe Wu
• [gmx-users] Too few cells to run on multiple cores   Adrian Devitt-Lee
  • [gmx-users] Too few cells to run on multiple cores   Szilárd Páll
• [gmx-users] periodic-molecules = yes and movie   Alex
  • [gmx-users] periodic-molecules = yes and movie   Justin Lemkul
    • [gmx-users] periodic-molecules = yes and movie   Alex
      • [gmx-users] periodic-molecules = yes and movie   Justin Lemkul
      • [gmx-users] periodic-molecules = yes and movie   Alex
• [gmx-users] gromacs with mps   Szilárd Páll
• [gmx-users] GMXRC removes trailing colon from existing MANPATH   Szilárd Páll
  • [gmx-users] GMXRC removes trailing colon from existing MANPATH   Peter Kroon
    • [gmx-users] GMXRC removes trailing colon from existing MANPATH   Szilárd Páll
• [gmx-users] NVIDIA CUDA Alanine Scanning   Szilárd Páll
• [gmx-users] Cannot compute velocity of COM of a group of atoms   ARNAB MUKHERJEE
  • [gmx-users] Cannot compute velocity of COM of a group of atoms   Justin Lemkul
    • [gmx-users] Cannot compute velocity of COM of a group of atoms   ARNAB MUKHERJEE
      • [gmx-users] Cannot compute velocity of COM of a group of atoms   Justin Lemkul
      • [gmx-users] Cannot compute velocity of COM of a group of atoms   Mark Abraham
• [gmx-users] Enthalpy calculation in NPT ensemble   Pelin S Bulutoglu
• [gmx-users] GROMACS 2018.2 mdrun GPU Assertion failed: Condition: cudaSuccess == cudaPeekAtLastError()   Jia Hong
  • [gmx-users] GROMACS 2018.2 mdrun GPU Assertion failed: Condition: cudaSuccess == cudaPeekAtLastError()   Jia Hong
    • [gmx-users] GROMACS 2018.2 mdrun GPU Assertion failed: Condition: cudaSuccess == cudaPeekAtLastError()   Mahmood Naderan
    • [gmx-users] GROMACS 2018.2 mdrun GPU Assertion failed: Condition: cudaSuccess == cudaPeekAtLastError()   Mark Abraham
      • [gmx-users] GROMACS 2018.2 mdrun GPU Assertion failed: Condition: cudaSuccess == cudaPeekAtLastError()   Jia Hong
      • [gmx-users] GROMACS 2018.2 mdrun GPU Assertion failed: Condition: cudaSuccess == cudaPeekAtLastError()   Szilárd Páll
      • [gmx-users] GROMACS 2018.2 mdrun GPU Assertion failed: Condition: cudaSuccess == cudaPeekAtLastError()   Jia Hong
• [gmx-users] residue not found   abhisek Mondal
  • [gmx-users] residue not found   Soham Sarkar
    • [gmx-users] residue not found   Justin Lemkul
      • [gmx-users] residue not found   abhisek Mondal
      • [gmx-users] residue not found   Soham Sarkar
• [gmx-users] Errors while trying to install GROMACS-2018   Lovuit CHEN
  • [gmx-users] Errors while trying to install GROMACS-2018   Szilárd Páll
• [gmx-users] high load imbalance in GMX5.1 using MARTINI FF   Linda Song
  • [gmx-users] high load imbalance in GMX5.1 using MARTINI FF   Szilárd Páll
• [gmx-users] Question about relation among couple-moltype , couple-lambda0 and couple-lambda1 parameter in free energy calculation.   김현준
• [gmx-users] make_ndx   hosein geraili
• [gmx-users] force/time application for pull   Rakesh Mishra
  • [gmx-users] force/time application for pull   Justin Lemkul
    • [gmx-users] force/time application for pull   Rakesh Mishra
      • [gmx-users] force/time application for pull   Mark Abraham
      • [gmx-users] force/time application for pull   Rakesh Mishra
      • [gmx-users] force/time application for pull   Justin Lemkul
      • [gmx-users] force/time application for pull   Mark Abraham
      • [gmx-users] force/time application for pull   Rakesh Mishra
      • [gmx-users] force/time application for pull   Rakesh Mishra
      • [gmx-users] force/time application for pull   Rakesh Mishra
      • [gmx-users] force/time application for pull   Benson Muite
      • [gmx-users] force/time application for pull   Rakesh Mishra
• [gmx-users] Structure of polyvinyltoluene   Harrisson, Genevieve
  • [gmx-users] Structure of polyvinyltoluene   paul buscemi
• [gmx-users] Protein-Ligand in bilayer   RAHUL SURESH
  • [gmx-users] Protein-Ligand in bilayer   Abhishek Acharya
    • [gmx-users] Protein-Ligand in bilayer   RAHUL SURESH
      • [gmx-users] Protein-Ligand in bilayer   Abhishek Acharya
      • [gmx-users] Protein-Ligand in bilayer   RAHUL SURESH
      • [gmx-users] Protein-Ligand in bilayer   Abhishek Acharya
      • [gmx-users] Using multiple GPU's   paul buscemi
      • [gmx-users] Using multiple GPU's   Kevin Boyd
      • [gmx-users] Using multiple GPU's   paul buscemi
      • [gmx-users] Using multiple GPU's   Mark Abraham
      • [gmx-users] Using multiple GPU's   paul buscemi
      • [gmx-users] Using multiple GPU's   Mark Abraham
  • [gmx-users] Protein-Ligand in bilayer   Mark Abraham
    • [gmx-users] Protein-Ligand in bilayer   RAHUL SURESH
      • [gmx-users] Protein-Ligand in bilayer   RAHUL SURESH
      • [gmx-users] Protein-Ligand in bilayer   Mark Abraham
      • [gmx-users] Protein-Ligand in bilayer   RAHUL SURESH
• [gmx-users] Center to center distance in cylindrical micelles   Shan Jayasinghe
  • [gmx-users] Center to center distance in cylindrical micelles   Mark Abraham
    • [gmx-users] Center to center distance in cylindrical micelles   Shan Jayasinghe
      • [gmx-users] Center to center distance in cylindrical micelles   Mark Abraham
      • [gmx-users] Center to center distance in cylindrical micelles   paul buscemi
      • [gmx-users] Center to center distance in cylindrical micelles   Shan Jayasinghe
      • [gmx-users] Center to center distance in cylindrical micelles   Mark Abraham
      • [gmx-users] Center to center distance in cylindrical micelles   Shan Jayasinghe
      • [gmx-users] Center to center distance in cylindrical micelles   Shan Jayasinghe
      • [gmx-users] Center to center distance in cylindrical micelles   Dallas Warren
      • [gmx-users] Center to center distance in cylindrical micelles   Antonio Baptista
• [gmx-users] Large differences in calculated and experimental relative hydration free energy.   Abhishek Acharya
  • [gmx-users] Large differences in calculated and experimental relative hydration free energy.   Mark Abraham
    • [gmx-users] Large differences in calculated and experimental relative hydration free energy.   Abhishek Acharya
• [gmx-users] Research Programmer Positions Available   João Ribeiro
• [gmx-users] Related to g_enemat command   ISHRAT JAHAN
  • [gmx-users] Related to g_enemat command   Mark Abraham
    • [gmx-users] Related to g_enemat command   ISHRAT JAHAN
      • [gmx-users] Related to g_enemat command   Mark Abraham
• [gmx-users] RDF calculations for certain atoms in a polymer   Mahsa
  • [gmx-users] RDF calculations for certain atoms in a polymer   Mark Abraham
    • [gmx-users] RDF calculations for certain atoms in a polymer   Mahsa
      • [gmx-users] RDF calculations for certain atoms in a polymer   Dallas Warren
      • [gmx-users] RDF calculations for certain atoms in a polymer   Mahsa
      • [gmx-users] RDF calculations for certain atoms in a polymer   Mark Abraham
      • [gmx-users] RDF calculations for certain atoms in a polymer   Mahsa
• [gmx-users] No default Ryckaert-Bell. types   Baolin Huang
  • [gmx-users] No default Ryckaert-Bell. types   Dan Gil
    • [gmx-users] No default Ryckaert-Bell. types   Baolin Huang
      • [gmx-users] No default Ryckaert-Bell. types   Justin Lemkul
• [gmx-users] Simulations with SWM4-DP water model in non PBC   Chi Yuen Pak
  • [gmx-users] Simulations with SWM4-DP water model in non PBC   David van der Spoel
• [gmx-users] FW: Binding cavity analysis   Ullmann, Thomas
• [gmx-users] Binding cavity analysis   Ullmann, Thomas
• [gmx-users] refcoord-scaling=com   kai.exner at alumni.uni-ulm.de
  • [gmx-users] refcoord-scaling=com   Mark Abraham
• [gmx-users] CGMD fixing PBC effect   Nikhil Maroli
• [gmx-users] 回覆︰ Simulations with SWM4-DP water model in non PBC   Chi Yuen Pak
  • [gmx-users] 回覆︰ Simulations with SWM4-DP water model in non PBC   David van der Spoel
• [gmx-users] Mixing rule between organic and inorganic units   Baolin Huang
  • [gmx-users] Mixing rule between organic and inorganic units   Mark Abraham
• [gmx-users] 回复:Re: Mixing rule between organic and inorganic units   Baolin Huang
  • [gmx-users] 回复:Re: Mixing rule between organic and inorganic units   Justin Lemkul
• [gmx-users] 回复:Re: 回复:Re: Mixing rule between organic and inorganic units   Baolin Huang
  • [gmx-users] 回复:Re: 回复:Re: Mixing rule between organic and inorganic units   Justin Lemkul
    • [gmx-users] 回复:Re: 回复:Re: Mixing rule between organic and inorganic units   Mark Abraham
• [gmx-users] Gromacs 2018 support Radeon GPU?   김나연
  • [gmx-users] Gromacs 2018 support Radeon GPU?   Mark Abraham
• [gmx-users] trjconv (File input/output error)   Andrew Bostick
  • [gmx-users] trjconv (File input/output error)   David van der Spoel
• [gmx-users] Umbrella Sampling: At diff force constant   Md Masrul Huda
• [gmx-users] 回覆︰ 回覆︰ Simulations with SWM4-DP water model in non PBC   Chi Yuen Pak
• [gmx-users] How to search efficiently the mailing list.   Sergio Perez
  • [gmx-users] How to search efficiently the mailing list.   Justin Lemkul
• [gmx-users] new threadripper   Harry Mark Greenblatt
• [gmx-users] Enthalpy calculation in NPT ensemble   Pelin S Bulutoglu
  • [gmx-users] Enthalpy calculation in NPT ensemble   David van der Spoel
    • [gmx-users] Enthalpy calculation in NPT ensemble   Pelin S Bulutoglu
      • [gmx-users] Enthalpy calculation in NPT ensemble   David van der Spoel
• [gmx-users] GTP   Mahdi Sobati Nezhad
  • [gmx-users] GTP   Justin Lemkul
    • [gmx-users] GTP   Mahdi Sobati Nezhad
      • [gmx-users] GTP   Justin Lemkul
• [gmx-users] .gro file   hosein geraili
• [gmx-users] Overlapping frames within one .xtc   Sergio Perez
  • [gmx-users] Overlapping frames within one .xtc   Paul bauer
    • [gmx-users] Overlapping frames within one .xtc   Sergio Perez
      • [gmx-users] Overlapping frames within one .xtc   Mark Abraham
• [gmx-users] Coordinates transformation   Yasser Almeida Hernández
  • [gmx-users] Coordinates transformation   Justin Lemkul
• [gmx-users] Combining two pdb   RAHUL SURESH
  • [gmx-users] Combining two pdb   Justin Lemkul
• [gmx-users] Negative tilt factor   Maureen M Kitheka
• [gmx-users] Test particle insertion in designated coordinates gives Segmentation fault   Zheng, Lingru
• [gmx-users] Estimating the required computer resource for a MD project   Alex
• [gmx-users] thread-MPI compatibility requirement?   Jost, Gabriele (ARC-TNC)[Supersmith]
  • [gmx-users] thread-MPI compatibility requirement?   Kevin Boyd
• [gmx-users] Index oh dihedral for dPCA   mfat290 at yahoo.com
• [gmx-users] Question regarding dihedral angle parameters   Upendra N
  • [gmx-users] Question regarding dihedral angle parameters   Justin Lemkul
    • [gmx-users] Question regarding dihedral angle parameters   Upendra N
      • [gmx-users] Question regarding dihedral angle parameters   Justin Lemkul
      • [gmx-users] Question regarding dihedral angle parameters   Upendra N
• [gmx-users] Rigid four atom molecule using LINCS   Philip Loche
• [gmx-users] PCA analysis   Ashu Sharma
• [gmx-users] Scaling factor on Sigma and epsilon   hosein geraili
• [gmx-users] how to use backup files as an input file?   mmousivand93
  • [gmx-users] how to use backup files as an input file?   Kevin Boyd
• [gmx-users] Getting ligand's topology   Mahdi Sobati Nezhad
  • [gmx-users] Getting ligand's topology   RAHUL SURESH
    • [gmx-users] Getting ligand's topology   Mahdi Sobati Nezhad
      • [gmx-users] Getting ligand's topology   RAHUL SURESH
      • [gmx-users] Getting ligand's topology   Mahdi Sobati Nezhad
      • [gmx-users] Getting ligand's topology   RAHUL SURESH
      • [gmx-users] Getting ligand's topology   Justin Lemkul
      • [gmx-users] Getting ligand's topology   RAHUL SURESH
      • [gmx-users] Getting ligand's topology   Mahdi Sobati Nezhad
      • [gmx-users] Getting ligand's topology   Justin Lemkul
      • [gmx-users] Getting ligand's topology   Bratin Kumar Das
      • [gmx-users] Getting ligand's topology   Mahdi Sobati Nezhad
      • [gmx-users] Getting ligand's topology   Justin Lemkul
      • [gmx-users] Getting ligand's topology   Mahdi Sobati Nezhad
      • [gmx-users] Getting ligand's topology   Justin Lemkul
• [gmx-users] Step Four: Adding Ions   Maximiliano Sebastián Castillo
  • [gmx-users] Step Four: Adding Ions   RAHUL SURESH
    • [gmx-users] Step Four: Adding Ions   Bratin Kumar Das
• [gmx-users] lipid relaxation time   Neda Rafiee
• [gmx-users] Combining position restraints with Parrinello-Rahman pressure coupling leads to instabilities   Naba
  • [gmx-users] Combining position restraints with Parrinello-Rahman pressure coupling leads to instabilities   Justin Lemkul
• [gmx-users] [Install error] What can I do this situation?   김나연
  • [gmx-users] [Install error] What can I do this situation?   Szilárd Páll
• [gmx-users] gmx clustsize   Pandya, Akash
  • [gmx-users] gmx clustsize   Justin Lemkul
• [gmx-users] Combining position restraints with Parrinello-Rahman pressure coupling leads to instabilities   Naba
  • [gmx-users] Combining position restraints with Parrinello-Rahman pressure coupling leads to instabilities   Justin Lemkul
• [gmx-users] Density of POPC membrane and lateral diffusion   Smith, Iris
  • [gmx-users] Density of POPC membrane and lateral diffusion   Kevin Boyd
    • [gmx-users] [EXT] Re: Density of POPC membrane and lateral diffusion   Smith, Iris
• [gmx-users] minimization_aborted   Bratin Kumar Das
  • [gmx-users] minimization_aborted   RAHUL SURESH
    • [gmx-users] minimization_aborted   Bratin Kumar Das
      • [gmx-users] minimization_aborted   Alex
      • [gmx-users] minimization_aborted   RAHUL SURESH
      • [gmx-users] minimization_aborted   Justin Lemkul
      • [gmx-users] minimization_aborted   RAHUL SURESH
      • [gmx-users] minimization_aborted   Bratin Kumar Das
      • [gmx-users] minimization_aborted   Alex
• [gmx-users] Residue not found in topology   Amir Zeb
  • [gmx-users] Residue not found in topology   Bratin Kumar Das
    • [gmx-users] Residue not found in topology   Bratin Kumar Das
      • [gmx-users] Residue not found in topology   Justin Lemkul
      • [gmx-users] Residue not found in topology   Amir Zeb
      • [gmx-users] Residue not found in topology   Bratin Kumar Das
      • [gmx-users] Residue not found in topology   Justin Lemkul
      • [gmx-users] Residue not found in topology   Amir Zeb
      • [gmx-users] Residue not found in topology   Justin Lemkul
      • [gmx-users] Residue not found in topology   Justin Lemkul
• [gmx-users] Changing Sigma in force field   hosein geraili
  • [gmx-users] Changing Sigma in force field   Mark Abraham
• [gmx-users] gmx_dipoles Mtot and aver difference   Raag Saluja
  • [gmx-users] gmx_dipoles Mtot and aver difference   David van der Spoel
• [gmx-users] specbonds   Momin Ahmad
  • [gmx-users] specbonds   Justin Lemkul
• [gmx-users] SWM4-NDP Simulation   Julian Müller
  • [gmx-users] SWM4-NDP Simulation   Justin Lemkul
• [gmx-users] residue-ligand interaction energy using rerun option in mdrun   vijayakumar gosu
  • [gmx-users] residue-ligand interaction energy using rerun option in mdrun   Justin Lemkul
• [gmx-users] gromacs.org_gmx-users Digest, Vol 172, Issue 71   vijayakumar gosu
  • [gmx-users] residue-ligand interaction energy using rerun option in mdrun   Justin Lemkul
• [gmx-users] GROMACS 2018.3 patch release available   Paul bauer
• [gmx-users] Feedback wanted - mdp option for preparation vs production   Mark Abraham
  • [gmx-users] Feedback wanted - mdp option for preparation vs production   Dallas Warren
  • [gmx-users] Feedback wanted - mdp option for preparation vs production   Victor Rosas Garcia
    • [gmx-users] Feedback wanted - mdp option for preparation vs production   Mark Abraham
      • [gmx-users] Feedback wanted - mdp option for preparation vs production   Justin Lemkul
      • [gmx-users] Feedback wanted - mdp option for preparation vs production   Paul bauer
      • [gmx-users] Feedback wanted - mdp option for preparation vs production   Szilárd Páll
      • [gmx-users] Feedback wanted - mdp option for preparation vs production   Mark Abraham
      • [gmx-users] Feedback wanted - mdp option for preparation vs production   Szilárd Páll
      • [gmx-users] Feedback wanted - mdp option for preparation vs production   Mark Abraham
• [gmx-users] gmx msd and standard deviation for each dt   Sevahn Vorperian
  • [gmx-users] gmx msd and standard deviation for each dt   David van der Spoel
• [gmx-users] Gromacs to Amber   Akshay
• [gmx-users] obtaining series of data from same run and gen-vel   Felix Y Yang
• [gmx-users] Qm/mm   rose rahmani
  • [gmx-users] Qm/mm   Benson Muite
    • [gmx-users] Qm/mm   rose rahmani
      • [gmx-users] Qm/mm   Justin Lemkul
  • [gmx-users] Qm/mm   Albert
    • [gmx-users] Qm/mm   rose rahmani
      • [gmx-users] Qm/mm   Alex
• [gmx-users] gmx_dipoles Mtot and aver difference   Raag Saluja
  • [gmx-users] gmx_dipoles Mtot and aver difference   Justin Lemkul
• [gmx-users] How to center my complex in the box?   mmousivand93
  • [gmx-users] How to center my complex in the box?   ISHRAT JAHAN
  • [gmx-users] How to center my complex in the box?   Bratin Kumar Das
• [gmx-users] gmx_dipoles Mtot and aver difference   Raag Saluja
  • [gmx-users] gmx_dipoles Mtot and aver difference   Justin Lemkul
• [gmx-users] How to evaluate the Hbond and non-bonded interactions between ligand-receptor   mmousivand93
  • [gmx-users] How to evaluate the Hbond and non-bonded interactions between ligand-receptor   Quyen Vu Van
• [gmx-users] potential energy per molecules or per mole   Dhawal Shah
  • [gmx-users] potential energy per molecules or per mole   Alex
• [gmx-users] potential energy per molecules or per mole   Dhawal Shah
  • [gmx-users] potential energy per molecules or per mole   Alex
• [gmx-users] Can I calculate thermal conductivity of a material in Gromacs?   Tong Li
  • [gmx-users] Can I calculate thermal conductivity of a material in Gromacs?   David van der Spoel
    • [gmx-users] Can I calculate thermal conductivity of a material in Gromacs?   Alex
• [gmx-users] free energy calculation.   neelam wafa
  • [gmx-users] Fwd: free energy calculation.   neelam wafa
    • [gmx-users] Fwd: free energy calculation.   Dallas Warren
• [gmx-users] GROMACS result not matching with my code   Kumari Shilpa
• [gmx-users] Calculate and print ALL distances between atoms A and B from structure file (i.e. not over time), with detailed information   Javier Luque Di Salvo
  • [gmx-users] Calculate and print ALL distances between atoms A and B from structure file (i.e. not over time), with detailed information   Justin Lemkul
• [gmx-users] Parametrization matters   Disraeli Cavalcante Araujo Vasconcelos UFC
• [gmx-users] protein dna pulling   abhisek Mondal
• [gmx-users] re-How to evaluate the Hbond and non-bonded interactions between ligand-receptor   mmousivand93
• [gmx-users] Turing GPUs   Dallas Warren
• [gmx-users] rotation of atoms by more than 90 degrees & LINCS Warnings   sagar bathla
  • [gmx-users] rotation of atoms by more than 90 degrees & LINCS Warnings   Dan Gil
• [gmx-users] rerun doesn't calculate Coulomb & LJ interactions between groups   Irem Altan
  • [gmx-users] rerun doesn't calculate Coulomb & LJ interactions between groups   Justin Lemkul
    • [gmx-users] Heterogeneous GPU cluster question?   Smith, Micholas D.
      • [gmx-users] Heterogeneous GPU cluster question?   Szilárd Páll
• [gmx-users] Interaction energy with Reaction-field   Caceres Delpiano J.
• [gmx-users] Intramolecular interaction i don't know how to restraint by add intramol interaction to .top   hoangtung9597
• [gmx-users] Joining two simulation box into a big box   Joydeep Munshi
  • [gmx-users] Joining two simulation box into a big box   Dallas Warren
• [gmx-users] Values of coul_lambda for free energy calculation.   neelam wafa
  • [gmx-users] Values of coul_lambda for free energy calculation.   neelam wafa
  • [gmx-users] Values of coul_lambda for free energy calculation.   Dallas Warren
• [gmx-users] free energy of complex system   abhisek Mondal
  • [gmx-users] free energy of complex system   Dallas Warren
• [gmx-users] restrain ligand in free energy.   Tùng Hoàng
  • [gmx-users] restrain ligand in free energy.   Bratin Kumar Das
    • [gmx-users] restrain ligand in free energy.   hoangtung9597
• [gmx-users] gromacs.org_gmx-users Digest, Vol 172, Issue 89   sagar bathla
  • [gmx-users] gromacs.org_gmx-users Digest, Vol 172, Issue 89   Dan Gil
• [gmx-users] DNA simulation and choice of temperature coupling groups   Athina Meletiou
  • [gmx-users] DNA simulation and choice of temperature coupling groups   Dallas Warren
• [gmx-users] Gromacs 2018.3 install warning   Du, Yu
  • [gmx-users] Gromacs 2018.3 install warning   Paul bauer
    • [gmx-users] Gromacs 2018.3 install warning   Du, Yu
• [gmx-users] PDB code   Nick Johans
  • [gmx-users] PDB code   Nick Johans
    • [gmx-users] [BULK][EXT] Re: PDB code   Smith, Iris
      • [gmx-users] [BULK][EXT] Re: PDB code   Nick Johans
      • [gmx-users] [BULK][EXT] Re: PDB code   Justin Lemkul
      • [gmx-users] [BULK][EXT] Re: PDB code   Nick Johans
      • [gmx-users] [BULK][EXT] Re: PDB code   Justin Lemkul
• [gmx-users] free energy of restraints   asaffarhi at post.tau.ac.il
• [gmx-users] (no subject)   Rakesh Mishra
• [gmx-users] Documentation on gmx densorder?   Smith, Micholas D.
  • [gmx-users] Documentation on gmx densorder?   David van der Spoel
    • [gmx-users] Documentation on gmx densorder?   Smith, Micholas D.
      • [gmx-users] Documentation on gmx densorder?   Eric Smoll
• [gmx-users] GROMACS XRD analysis   Li, Shi
• [gmx-users] Force Calculation through Pulling   Samieegohar, Mohammadreza
• [gmx-users] Syntax Error when Adding Ions to DNA/ligand complex   Wahl, David M
  • [gmx-users] Syntax Error when Adding Ions to DNA/ligand complex   Dallas Warren
• [gmx-users] (no subject)   Rakesh Mishra
• [gmx-users] (no subject)   Rakesh Mishra
  • [gmx-users] (no subject)   Mark Abraham
    • [gmx-users] (no subject)   Rakesh Mishra
      • [gmx-users] (no subject)   Rakesh Mishra
• [gmx-users] Optimal pme grid   Mahmood Naderan
• [gmx-users] bk3 water energy minimization potential shift   Jo Jo
• [gmx-users] Drude polarization ff for Ca2+ and Mg2+   Xianchi Dong
• [gmx-users] GROMACS 2018.x installation   Gregory Poon

Last message date: Fri Aug 31 23:28:22 CEST 2018
Archived on: Fri Aug 31 23:28:23 CEST 2018

• Messages sorted by: [ subject ] [ author ] [ date ]
• More info on this list...