[gmx-users] Umbrella Sampling: At diff force constant
Md Masrul Huda
mail2masrul at gmail.com
Mon Aug 13 23:45:18 CEST 2018
Dear All:
I am doing umbrella sampling for a dimer (Consist of two molecules
stacking together, no physical bond). I tried different force constants,
I got different PMF for each of them. Could you suggest me, How reliably
can I choose force constant. Followings are the settings:
; Pull code
pull = yes
pull_ncoords = 1
pull_ngroups = 2
pull_group1_name = FXD
pull_group2_name = PUL
pull_coord1_type = umbrella
pull_coord1_geometry = distance
pull_coord1_dim = N N Y
pull_coord1_groups = 1 2
pull_coord1_start = yes
pull_coord1_rate = 0.0
pull_coord1_k = 1000/500/200
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Thanks in advance for your valuable suggestions.
Sincerely yours,
Masrul
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