[gmx-users] How to center my complex in the box?

mmousivand93 mmousivand93 at ut.ac.ir
Sat Aug 25 16:23:31 CEST 2018

Dear all users 

I have  run a molecular dynamic simulation for my aptamer-ligand  by
gromacs (50 ns), At the end of simulations,by using VMD,it seems the
molecule is out side the box, but I am not sure, is it possible to check
the attachment and explain how to center it again? 

Thanks a lot 


More information about the gromacs.org_gmx-users mailing list