[gmx-users] cannot flush logfile

Justin Lemkul jalemkul at vt.edu
Tue Jan 23 00:40:22 CET 2018

On 1/22/18 6:39 PM, Neda Rafiee wrote:
> Dear Users,
> I have a problem with running my simulation on cluster. Actually the error says : "Fatal error:Cannot flush logfile - maybe you are out of disk space?"  while I have plenty of free disk space. I have also tried with different number of nodes and processors per node and I encountered the same problem.
> I am using gromacs v.5.0 with the following modules:
> module load intel/2013
> module load openmpi/1.6.5/intel/2013
> module load gromacs/5.0-rc1

Don't use release candidates, particularly those of old versions. Update 
to a real release (or insist that your sysadmins do this, because what 
you're using is not a real, production-quality release).



Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061

jalemkul at vt.edu | (540) 231-3129


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