[gmx-users] Alternative for do_dssp for secondary structure analysis?

[ZHANG Cheng]

Dear Gromacs,
Can I ask if there is an alternative to do_dssp for secondary structure analysis?


I am waiting for our IT staff to install the DSSP on our cluster. But there was some errors.
https://github.com/UCL-RITS/rcps-buildscripts/issues/137


While still waiting for that, can I ask if Gromacs has other tools (e.g. STRIDE) for secondary structure analysis?


Now I am using the VMD-Timeline tool, which uses the STRIDE
http://webclu.bio.wzw.tum.de/stride/


Thank you.


Yours sincerely
Cheng