[gmx-users] Alternative for do_dssp for secondary structure analysis?

ZHANG Cheng 272699575 at qq.com
Thu Jan 25 16:54:41 CET 2018

Dear Gromacs,
Can I ask if there is an alternative to do_dssp for secondary structure analysis?

I am waiting for our IT staff to install the DSSP on our cluster. But there was some errors.

While still waiting for that, can I ask if Gromacs has other tools (e.g. STRIDE) for secondary structure analysis?

Now I am using the VMD-Timeline tool, which uses the STRIDE

Thank you.

Yours sincerely

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