[gmx-users] Alternative for do_dssp for secondary structure analysis?

[Justin Lemkul]

On 1/25/18 10:54 AM, ZHANG Cheng wrote:
> Dear Gromacs,
> Can I ask if there is an alternative to do_dssp for secondary structure analysis?
>
>
> I am waiting for our IT staff to install the DSSP on our cluster. But there was some errors.
> https://github.com/UCL-RITS/rcps-buildscripts/issues/137
>

Normally, users can install anything they like in their home 
directories. Then just set the DSSP environment variable to point to the 
binary.

> While still waiting for that, can I ask if Gromacs has other tools (e.g. STRIDE) for secondary structure analysis?

It does not.

-Justin

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Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

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