[gmx-users] Index file regarding

[RAHUL SURESH]

Hi, I have created the index file. Now I want to calculate the rmsd of the
C-alpha atoms of the index group alone.. So what group should i select?

On Mon, May 7, 2018 at 6:50 PM, RAHUL SURESH <drrahulsuresh at gmail.com>
wrote:

> thank you.
>
> On Mon, May 7, 2018 at 3:39 PM, Shreyas Kaptan <shreyaskaptan at gmail.com>
> wrote:
>
>> It's 'r37-70 | r 120-167 | ...'  so on and so forth.
>>
>> On Mon, May 7, 2018 at 12:06 PM RAHUL SURESH <drrahulsuresh at gmail.com>
>> wrote:
>>
>> > Dear all,
>> >
>> > My protein structure has 400 residues of which I want to calculate RMSD
>> of
>> > particular 200 residues (approx) and they are not continuous. For
>> example,
>> > from 34-70; 120-167; 180-210;.... For this how can I create an index
>> file?
>> >
>> > Thank you
>> >
>> > --
>> > *Regards,*
>> > *Rahul Suresh*
>> > *Research Scholar*
>> > *Bharathiar University*
>> > *Coimbatore*
>> > --
>> > Gromacs Users mailing list
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>>
>> --
>> Shreyas Sanjay Kaptan
>> --
>> Gromacs Users mailing list
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>
>
>
> --
> *Regards,*
> *Rahul Suresh*
> *Research Scholar*
> *Bharathiar University*
> *Coimbatore*
>



-- 
*Regards,*
*Rahul Suresh*
*Research Scholar*
*Bharathiar University*
*Coimbatore*