[gmx-users] SMD regarding

[RAHUL SURESH]

Thank you Dr. Mark

Is it valid to do such simulation despite causing the distortion in lipids?


On Sat, 12 May 2018 at 8:06 PM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi,
>
> It's clear that pulling on a membrane protein will affect the behavior of
> the lipids in the membrane.
>
> Mark
>
> On Sat, May 12, 2018, 14:21 RAHUL SURESH <drrahulsuresh at gmail.com> wrote:
>
> > Dear users,
> >
> > I have a complex [ dimer ] membrane protein. I want to perform sMD for
> this
> > complex structure. Is it valid and possible  to perform pull code for the
> > complex protein structure in the presence of lipid bilayer ?
> >
> > If yes, will it not disturb the lipid configurations of the system?
> >
> > Thank you.
> > --
> > *Regards,*
> > *Rahul *
> > --
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-- 
*Regards,*
*Rahul *