[gmx-users] RDF

[Alex]

Dear all,

I wan to parameterize the interaction between coarse-grained beads of a
molecule and beads of P$ martini water using Votca. So, I want to calculate
the RDF between moecules's beads and water beads in atomistic level as
target RDF.
I know the mapping of the molecule itself so that I know how to calculate
the RDF between molecule's beads in atomistic level easily, but my problem
is with calculation the RDF between molecule's bead and water bead, as I do
not know the mapping of water, so, I wonder if one could help me calculate
the RDF between molecule's beads and water?
Thank you.
Alex