[gmx-users] index.ndx file of all cluster

Alex alexanderwien2k at gmail.com
Sun Sep 22 21:34:45 CEST 2019

Dear all,
The gmx clustsize -mcn maxclust.ndx gives the index.ndx file only for the
largest cluster formed in the system, I wonder if it is possible to have
the index.ndx for other clusters in the system?
Of course, one tedious way is to detect the maxclust and remove it from
trajectory and then the second-largest cluster would be the new largest one
and so on ... .


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