[gmx-users] index.ndx file of all cluster

Alex alexanderwien2k at gmail.com
Tue Sep 24 16:38:18 CEST 2019

Any comment is highly appreciated.


On Sun, Sep 22, 2019 at 3:34 PM Alex <alexanderwien2k at gmail.com> wrote:

> Dear all,
> The gmx clustsize -mcn maxclust.ndx gives the index.ndx file only for the
> largest cluster formed in the system, I wonder if it is possible to have
> the index.ndx for other clusters in the system?
> Of course, one tedious way is to detect the maxclust and remove it from
> trajectory and then the second-largest cluster would be the new largest one
> and so on ... .
> Regards,
> Alex

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