[gmx-users] Index group for Backbone/C-alpha of specific stretch of residues

[Navneet Kumar]

Thank You, Sir!

On Wed, Jan 8, 2020 at 3:19 PM Christian Blau <blau at kth.se> wrote:

> Hi Navnett,
>
>
> gmx select will be your friend.
>
>
> At the bottom of
>
> http://manual.gromacs.org/documentation/current/onlinehelp/selections.html
>
> you'll find some example commands. Something along the lines of
>
>    gmx select -select 'name CA and resid > 149 and resid < 211'
>
> should work.
>
>
> It's a very powerful syntax and I figured for me it was very much worth
> the effort reading through that documentation.
>
>
> Best,
>
> Chrsitian
>
> On 2020-01-08 10:42, Navneet Kumar wrote:
> > Sorry, it should be 150-200 residues.
> >
> > On Wed, Jan 8, 2020 at 3:09 PM Navneet Kumar <navneetcdl at gmail.com>
> wrote:
> >
> >> Hello Everyone!
> >>
> >>
> >> How to create an index group for Backbone/C-alpha for a specific set of
> >> residues from protein? (Say Protein with 200 amino acid; want to create
> an
> >> index group for the backbone of residues 150-210).
> >> Regards
> >> Navneet Kumar
> >>
> >>
> >>
> >>
> >>
> >>
> --
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-- 






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_______________________________________________________

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*NAVNEET KUMAR*
Doctoral Student
Dept. of Pharmacoinformatics
National Institute of Pharmaceutical Education and Research, Sector 67,
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